/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
-*/\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+ */\r
package jalview.jbgui;\r
\r
import java.awt.*;\r
-\r
-import javax.swing.*;\r
-import javax.swing.border.TitledBorder;\r
import java.awt.event.*;\r
+import javax.swing.*;\r
+import javax.swing.border.*;\r
import javax.swing.event.*;\r
-import java.awt.Font;\r
-import java.awt.Rectangle;\r
-import java.awt.Insets;\r
\r
/**\r
* DOCUMENT ME!\r
* @author $author$\r
* @version $Revision$\r
*/\r
-public class GPreferences extends JPanel\r
+public class GPreferences\r
+ extends JPanel\r
{\r
- JTabbedPane tabbedPane = new JTabbedPane();\r
-\r
- JButton ok = new JButton();\r
- JButton cancel = new JButton();\r
- JPanel okCancelPanel = new JPanel();\r
- BorderLayout borderLayout1 = new BorderLayout();\r
- protected JCheckBox quality = new JCheckBox();\r
- JPanel visualTab = new JPanel();\r
+ JTabbedPane tabbedPane = new JTabbedPane();\r
+\r
+ JButton ok = new JButton();\r
+ JButton cancel = new JButton();\r
+ JPanel okCancelPanel = new JPanel();\r
+ BorderLayout borderLayout1 = new BorderLayout();\r
+ protected JCheckBox quality = new JCheckBox();\r
+ JPanel visualTab = new JPanel();\r
protected JCheckBox fullScreen = new JCheckBox();\r
- protected JCheckBox conservation = new JCheckBox();\r
- protected JCheckBox identity = new JCheckBox();\r
- protected JCheckBox annotations = new JCheckBox();\r
- JLabel gapLabel = new JLabel();\r
- protected JComboBox colour = new JComboBox();\r
- JLabel colourLabel = new JLabel();\r
- JLabel fontLabel = new JLabel();\r
- protected JComboBox fontSizeCB = new JComboBox();\r
- protected JComboBox fontStyleCB = new JComboBox();\r
- protected JComboBox fontNameCB = new JComboBox();\r
- protected JComboBox gapSymbolCB = new JComboBox();\r
- protected JCheckBox startupCheckbox = new JCheckBox();\r
- protected JTextField startupFileTextfield = new JTextField();\r
+ protected JCheckBox conservation = new JCheckBox();\r
+ protected JCheckBox identity = new JCheckBox();\r
+ protected JCheckBox annotations = new JCheckBox();\r
+ JLabel gapLabel = new JLabel();\r
+ protected JComboBox colour = new JComboBox();\r
+ JLabel colourLabel = new JLabel();\r
+ JLabel fontLabel = new JLabel();\r
+ protected JComboBox fontSizeCB = new JComboBox();\r
+ protected JComboBox fontStyleCB = new JComboBox();\r
+ protected JComboBox fontNameCB = new JComboBox();\r
+ protected JComboBox gapSymbolCB = new JComboBox();\r
+ protected JCheckBox startupCheckbox = new JCheckBox();\r
+ protected JTextField startupFileTextfield = new JTextField();\r
JPanel connectTab = new JPanel();\r
JLabel serverLabel = new JLabel();\r
protected JList linkURLList = new JList();\r
JLabel epsLabel = new JLabel();\r
protected JComboBox epsRendering = new JComboBox();\r
JLabel jLabel1 = new JLabel();\r
- protected JCheckBox blcjv = new JCheckBox();\r
- protected JCheckBox pileupjv = new JCheckBox();\r
- protected JCheckBox clustaljv = new JCheckBox();\r
- protected JCheckBox msfjv = new JCheckBox();\r
- protected JCheckBox fastajv = new JCheckBox();\r
- protected JCheckBox pfamjv = new JCheckBox();\r
+ protected JCheckBox blcjv = new JCheckBox();\r
+ protected JCheckBox pileupjv = new JCheckBox();\r
+ protected JCheckBox clustaljv = new JCheckBox();\r
+ protected JCheckBox msfjv = new JCheckBox();\r
+ protected JCheckBox fastajv = new JCheckBox();\r
+ protected JCheckBox pfamjv = new JCheckBox();\r
FlowLayout flowLayout1 = new FlowLayout();\r
- protected JCheckBox pirjv = new JCheckBox();\r
+ protected JCheckBox pirjv = new JCheckBox();\r
JPanel jPanel11 = new JPanel();\r
Font verdana11 = new java.awt.Font("Verdana", Font.PLAIN, 11);\r
protected JCheckBox seqLimit = new JCheckBox();\r
protected JCheckBox rightAlign = new JCheckBox();\r
protected JCheckBox idItalics = new JCheckBox();\r
/**\r
- * Creates a new GPreferences object.\r
- */\r
- public GPreferences()\r
+ * Creates a new GPreferences object.\r
+ */\r
+ public GPreferences()\r
+ {\r
+ try\r
{\r
- try\r
- {\r
- jbInit();\r
- }\r
- catch (Exception ex)\r
- {\r
- ex.printStackTrace();\r
- }\r
+ jbInit();\r
+ }\r
+ catch (Exception ex)\r
+ {\r
+ ex.printStackTrace();\r
}\r
+ }\r
\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @throws Exception DOCUMENT ME!\r
- */\r
- private void jbInit() throws Exception\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @throws Exception DOCUMENT ME!\r
+ */\r
+ private void jbInit()\r
+ throws Exception\r
+ {\r
+ this.setLayout(borderLayout1);\r
+ ok.setText("OK");\r
+ ok.addActionListener(new ActionListener()\r
{\r
- this.setLayout(borderLayout1);\r
- ok.setText("OK");\r
- ok.addActionListener(new ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent e)\r
- {\r
- ok_actionPerformed(e);\r
- }\r
- });\r
- cancel.setText("Cancel");\r
- cancel.addActionListener(new ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent e)\r
- {\r
- cancel_actionPerformed(e);\r
- }\r
- });\r
- quality.setEnabled(false);\r
- quality.setFont(verdana11);\r
- quality.setHorizontalAlignment(SwingConstants.RIGHT);\r
- quality.setHorizontalTextPosition(SwingConstants.LEFT);\r
- quality.setSelected(true);\r
- quality.setText("Quality");\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ ok_actionPerformed(e);\r
+ }\r
+ });\r
+ cancel.setText("Cancel");\r
+ cancel.addActionListener(new ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ cancel_actionPerformed(e);\r
+ }\r
+ });\r
+ quality.setEnabled(false);\r
+ quality.setFont(verdana11);\r
+ quality.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ quality.setHorizontalTextPosition(SwingConstants.LEFT);\r
+ quality.setSelected(true);\r
+ quality.setText("Quality");\r
visualTab.setBorder(new TitledBorder("Open new alignment"));\r
visualTab.setLayout(null);\r
fullScreen.setFont(verdana11);\r
- fullScreen.setHorizontalAlignment(SwingConstants.RIGHT);\r
- fullScreen.setHorizontalTextPosition(SwingConstants.LEFT);\r
+ fullScreen.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ fullScreen.setHorizontalTextPosition(SwingConstants.LEFT);\r
fullScreen.setText("Maximise Window");\r
conservation.setEnabled(false);\r
- conservation.setFont(verdana11);\r
- conservation.setHorizontalAlignment(SwingConstants.RIGHT);\r
- conservation.setHorizontalTextPosition(SwingConstants.LEFT);\r
- conservation.setSelected(true);\r
- conservation.setText("Conservation");\r
+ conservation.setFont(verdana11);\r
+ conservation.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ conservation.setHorizontalTextPosition(SwingConstants.LEFT);\r
+ conservation.setSelected(true);\r
+ conservation.setText("Conservation");\r
identity.setEnabled(false);\r
- identity.setFont(verdana11);\r
- identity.setHorizontalAlignment(SwingConstants.RIGHT);\r
- identity.setHorizontalTextPosition(SwingConstants.LEFT);\r
- identity.setSelected(true);\r
- identity.setText("Consensus");\r
+ identity.setFont(verdana11);\r
+ identity.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ identity.setHorizontalTextPosition(SwingConstants.LEFT);\r
+ identity.setSelected(true);\r
+ identity.setText("Consensus");\r
annotations.setFont(verdana11);\r
- annotations.setHorizontalAlignment(SwingConstants.RIGHT);\r
- annotations.setHorizontalTextPosition(SwingConstants.LEFT);\r
+ annotations.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ annotations.setHorizontalTextPosition(SwingConstants.LEFT);\r
annotations.setSelected(true);\r
- annotations.setText("Show Annotations");\r
+ annotations.setText("Show Annotations");\r
annotations.addActionListener(new ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent e)\r
- {\r
- annotations_actionPerformed(e);\r
- }\r
- });\r
- gapLabel.setFont(verdana11);\r
- gapLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
- gapLabel.setText("Gap Symbol ");\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ annotations_actionPerformed(e);\r
+ }\r
+ });\r
+ gapLabel.setFont(verdana11);\r
+ gapLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ gapLabel.setText("Gap Symbol ");\r
colour.setFont(verdana11);\r
- colour.setBounds(new Rectangle(172, 225, 155, 21));\r
- colourLabel.setFont(verdana11);\r
- colourLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
- colourLabel.setText("Colour ");\r
+ colour.setBounds(new Rectangle(172, 225, 155, 21));\r
+ colourLabel.setFont(verdana11);\r
+ colourLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ colourLabel.setText("Colour ");\r
fontLabel.setFont(verdana11);\r
- fontLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
- fontLabel.setText("Font ");\r
+ fontLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ fontLabel.setText("Font ");\r
fontSizeCB.setFont(verdana11);\r
- fontSizeCB.setBounds(new Rectangle(319, 111, 49, 21));\r
- fontStyleCB.setFont(verdana11);\r
- fontStyleCB.setBounds(new Rectangle(367, 111, 70, 21));\r
- fontNameCB.setFont(verdana11);\r
- fontNameCB.setBounds(new Rectangle(172, 111, 147, 21));\r
- gapSymbolCB.setFont(verdana11);\r
- gapSymbolCB.setBounds(new Rectangle(172, 204, 69, 21));\r
- startupCheckbox.setText("Open file");\r
+ fontSizeCB.setBounds(new Rectangle(319, 111, 49, 21));\r
+ fontStyleCB.setFont(verdana11);\r
+ fontStyleCB.setBounds(new Rectangle(367, 111, 70, 21));\r
+ fontNameCB.setFont(verdana11);\r
+ fontNameCB.setBounds(new Rectangle(172, 111, 147, 21));\r
+ gapSymbolCB.setFont(verdana11);\r
+ gapSymbolCB.setBounds(new Rectangle(172, 204, 69, 21));\r
+ startupCheckbox.setText("Open file");\r
startupCheckbox.setFont(verdana11);\r
- startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT);\r
- startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT);\r
- startupCheckbox.setSelected(true);\r
- startupFileTextfield.setFont(verdana11);\r
- startupFileTextfield.setBounds(new Rectangle(172, 273, 270, 20));\r
- startupFileTextfield.addMouseListener(new MouseAdapter()\r
- {\r
- public void mouseClicked(MouseEvent e)\r
- {\r
- if (e.getClickCount() > 1)\r
- {\r
- startupFileTextfield_mouseClicked();\r
- }\r
- }\r
- });\r
+ startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT);\r
+ startupCheckbox.setSelected(true);\r
+ startupFileTextfield.setFont(verdana11);\r
+ startupFileTextfield.setBounds(new Rectangle(172, 273, 270, 20));\r
+ startupFileTextfield.addMouseListener(new MouseAdapter()\r
+ {\r
+ public void mouseClicked(MouseEvent e)\r
+ {\r
+ if (e.getClickCount() > 1)\r
+ {\r
+ startupFileTextfield_mouseClicked();\r
+ }\r
+ }\r
+ });\r
\r
- connectTab.setLayout(gridBagLayout3);\r
+ connectTab.setLayout(gridBagLayout3);\r
serverLabel.setText("Address");\r
serverLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
serverLabel.setFont(verdana11);\r
defaultBrowser.setFont(verdana11);\r
defaultBrowser.setText("");\r
newLink.setText("New");\r
- newLink.addActionListener(new java.awt.event.ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
+ newLink.addActionListener(new java.awt.event.ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
newLink_actionPerformed(e);\r
}\r
});\r
editLink.setText("Edit");\r
- editLink.addActionListener(new java.awt.event.ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
+ editLink.addActionListener(new java.awt.event.ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
editLink_actionPerformed(e);\r
}\r
});\r
deleteLink.setText("Delete");\r
- deleteLink.addActionListener(new java.awt.event.ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
+ deleteLink.addActionListener(new java.awt.event.ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
deleteLink_actionPerformed(e);\r
}\r
});\r
\r
linkURLList.addListSelectionListener(new ListSelectionListener()\r
- {\r
- public void valueChanged(ListSelectionEvent e)\r
- {\r
- int index = linkURLList.getSelectedIndex();\r
- linkNameList.setSelectedIndex(index);\r
- }\r
- });\r
+ {\r
+ public void valueChanged(ListSelectionEvent e)\r
+ {\r
+ int index = linkURLList.getSelectedIndex();\r
+ linkNameList.setSelectedIndex(index);\r
+ }\r
+ });\r
\r
linkNameList.addListSelectionListener(new ListSelectionListener()\r
- {\r
- public void valueChanged(ListSelectionEvent e)\r
- {\r
- int index = linkNameList.getSelectedIndex();\r
- linkURLList.setSelectedIndex(index);\r
- }\r
- });\r
+ {\r
+ public void valueChanged(ListSelectionEvent e)\r
+ {\r
+ int index = linkNameList.getSelectedIndex();\r
+ linkURLList.setSelectedIndex(index);\r
+ }\r
+ });\r
\r
linkScrollPane.setBorder(null);\r
linkPanel.setBorder(new TitledBorder("URL link from Sequence ID"));\r
public void mouseClicked(MouseEvent e)\r
{\r
if (e.getClickCount() > 1)\r
- {\r
- defaultBrowser_mouseClicked(e);\r
- }\r
+ {\r
+ defaultBrowser_mouseClicked(e);\r
+ }\r
}\r
});\r
useProxy.setFont(verdana11);\r
linkScrollPane.getViewport().add(linkPanel2, null);\r
linkPanel2.add(linkURLList, BorderLayout.CENTER);\r
linkPanel2.add(linkNameList, BorderLayout.WEST);\r
- okCancelPanel.add(ok);\r
- okCancelPanel.add(cancel);\r
+ okCancelPanel.add(ok);\r
+ okCancelPanel.add(cancel);\r
this.add(tabbedPane, java.awt.BorderLayout.CENTER);\r
\r
- this.add(okCancelPanel, java.awt.BorderLayout.SOUTH);\r
+ this.add(okCancelPanel, java.awt.BorderLayout.SOUTH);\r
jPanel1.add(serverLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
, GridBagConstraints.WEST, GridBagConstraints.NONE,\r
new Insets(0, 2, 4, 0), 5, 0));\r
, GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
new Insets(15, 0, 0, 15), 307, 1));\r
\r
-\r
jPanel1.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0\r
, GridBagConstraints.WEST,\r
GridBagConstraints.NONE,\r
new Insets(0, 2, 5, 185), 2,\r
-4));\r
DefaultListCellRenderer dlcr = new DefaultListCellRenderer();\r
- dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER);\r
- gapSymbolCB.setRenderer(dlcr);\r
+ dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER);\r
+ gapSymbolCB.setRenderer(dlcr);\r
\r
tabbedPane.add(visualTab, "Visual");\r
- tabbedPane.add(connectTab,"Connections");\r
+ tabbedPane.add(connectTab, "Connections");\r
tabbedPane.add(exportTab, "Output");\r
jPanel11.add(jLabel1);\r
jPanel11.add(blcjv);\r
exportTab.add(jPanel11);\r
}\r
\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param e DOCUMENT ME!\r
- */\r
- public void ok_actionPerformed(ActionEvent e)\r
- {\r
- }\r
-\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param e DOCUMENT ME!\r
- */\r
- public void cancel_actionPerformed(ActionEvent e)\r
- {\r
- }\r
-\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param e DOCUMENT ME!\r
- */\r
- public void annotations_actionPerformed(ActionEvent e)\r
- {\r
- }\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param e DOCUMENT ME!\r
+ */\r
+ public void ok_actionPerformed(ActionEvent e)\r
+ {\r
+ }\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param e DOCUMENT ME!\r
+ */\r
+ public void cancel_actionPerformed(ActionEvent e)\r
+ {\r
+ }\r
\r
- /**\r
- * DOCUMENT ME!\r
- */\r
- public void startupFileTextfield_mouseClicked()\r
- {\r
- }\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param e DOCUMENT ME!\r
+ */\r
+ public void annotations_actionPerformed(ActionEvent e)\r
+ {\r
+ }\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ */\r
+ public void startupFileTextfield_mouseClicked()\r
+ {\r
+ }\r
\r
- public void newLink_actionPerformed(ActionEvent e) {\r
+ public void newLink_actionPerformed(ActionEvent e)\r
+ {\r
\r
}\r
\r
- public void editLink_actionPerformed(ActionEvent e) {\r
+ public void editLink_actionPerformed(ActionEvent e)\r
+ {\r
\r
}\r
\r
- public void deleteLink_actionPerformed(ActionEvent e) {\r
+ public void deleteLink_actionPerformed(ActionEvent e)\r
+ {\r
\r
}\r
\r
\r
public void useProxy_actionPerformed()\r
{\r
- proxyServerTB.setEnabled(useProxy.isSelected());\r
- proxyPortTB.setEnabled(useProxy.isSelected());\r
+ proxyServerTB.setEnabled(useProxy.isSelected());\r
+ proxyPortTB.setEnabled(useProxy.isSelected());\r
}\r
\r
}\r
git://source.jalview.org / jalview.git / blobdiff