import java.awt.Dimension;
import java.awt.FlowLayout;
import java.awt.Font;
+import java.awt.GridBagConstraints;
+import java.awt.GridBagLayout;
import java.awt.GridLayout;
import java.awt.Insets;
import java.awt.Point;
import jalview.gui.Desktop;
import jalview.gui.JvSwingUtils;
import jalview.gui.StructureViewer;
+import jalview.structure.StructureImportSettings;
+import jalview.structure.StructureImportSettings.TFType;
import jalview.util.MessageManager;
import jalview.util.Platform;
import net.miginfocom.swing.MigLayout;
{
private static final Font VERDANA_12 = new Font("Verdana", 0, 12);
+ private static final Font VERDANA_10 = new Font("Verdana", 0, 10);
+
public static final String VIEWS_FILTER = "VIEWS_FILTER";
protected static final String VIEWS_FROM_FILE = "VIEWS_FROM_FILE";
*/
protected static final String VIEWS_LOCAL_PDB = "VIEWS_LOCAL_PDB";
+ protected JPanel actionsPanel;
+
protected JPanel statusPanel = new JPanel();
public JLabel statusBar = new JLabel();
protected StringBuilder errorWarning = new StringBuilder();
+ protected JButton btn_cancel;
+
protected JButton btn_add;
protected JButton btn_newView;
protected JButton btn_pdbFromFile = new JButton();
+ protected JLabel lbl_pdbFile = new JLabel();
+
+ protected JLabel lbl_chooseTempFacType = new JLabel();
+
+ protected JComboBox<StructureImportSettings.TFType> combo_tempFacAs = new JComboBox<>();
+
+ protected boolean tempFacAsChanged = false;
+
+ protected JButton btn_paeMatrixFile = new JButton();
+
+ protected JLabel lbl_paeFile = new JLabel();
+
// holder for icon and button
protected JPanel pnl_queryTDB;
protected JLabel lbl_pdbManualFetchStatus = new JLabel(errorImage);
- protected JLabel lbl_fromFileStatus = new JLabel(errorImage);
+ // protected JLabel lbl_fromFileStatus = new JLabel(errorImage);
protected AssociateSeqPanel idInputAssSeqPanel = new AssociateSeqPanel();
try
{
jbInit();
+ mainFrame.setFrameIcon(null);
mainFrame.setVisible(false);
mainFrame.invalidate();
mainFrame.pack();
} catch (Exception e)
{
- System.out.println(e); // for JavaScript TypeError
+ jalview.bin.Console.outPrintln(e); // for JavaScript TypeError
e.printStackTrace();
}
}
}
});
- JButton btn_cancel = new JButton(
- MessageManager.getString("action.cancel"));
+ btn_cancel = new JButton(MessageManager.getString("action.cancel"));
btn_cancel.setFont(VERDANA_12);
- btn_cancel.addActionListener(new java.awt.event.ActionListener()
+ btn_cancel.addActionListener(new ActionListener()
{
@Override
public void actionPerformed(ActionEvent e)
MessageManager.formatMessage("action.new_structure_view_with",
StructureViewer.getViewerType().toString()));
btn_newView.setFont(VERDANA_12);
- btn_newView.addActionListener(new java.awt.event.ActionListener()
+ btn_newView.addActionListener(new ActionListener()
{
@Override
public void actionPerformed(ActionEvent e)
btn_add = new JButton(MessageManager.getString("action.add"));
btn_add.setFont(VERDANA_12);
- btn_add.addActionListener(new java.awt.event.ActionListener()
+ btn_add.addActionListener(new ActionListener()
{
@Override
public void actionPerformed(ActionEvent e)
btn_pdbFromFile.setFont(VERDANA_12);
String btn_title = MessageManager.getString("label.select_pdb_file");
btn_pdbFromFile.setText(btn_title + " ");
- btn_pdbFromFile.addActionListener(new java.awt.event.ActionListener()
+ btn_pdbFromFile.addActionListener(new ActionListener()
{
@Override
public void actionPerformed(ActionEvent e)
}
}
});
+ lbl_pdbFile.setFont(VERDANA_10);
+ lbl_pdbFile.setFont(VERDANA_10);
+
+ lbl_chooseTempFacType.setFont(VERDANA_12);
+ lbl_chooseTempFacType.setText(
+ MessageManager.getString("label.interpret_tempfac_as"));
+
+ combo_tempFacAs.setFont(VERDANA_12);
+ for (TFType t : TFType.values())
+ {
+ combo_tempFacAs.addItem(t);
+ }
+ combo_tempFacAs.addItemListener(new ItemListener()
+ {
+ @Override
+ public void itemStateChanged(ItemEvent e)
+ {
+ // used to determine if we should guess pLDDT or leave a user-choice
+ tempFacAsChanged = true;
+ }
+ });
+
+ btn_paeMatrixFile.setFont(VERDANA_12);
+ btn_paeMatrixFile
+ .setText(MessageManager.getString("label.add_pae_matrix_file"));
+ btn_paeMatrixFile.addActionListener(new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ paeMatrixFile_actionPerformed();
+ }
+ });
+ btn_paeMatrixFile.addKeyListener(new KeyAdapter()
+ {
+ @Override
+ public void keyPressed(KeyEvent evt)
+ {
+ if (evt.getKeyCode() == KeyEvent.VK_ENTER)
+ {
+ paeMatrixFile_actionPerformed();
+ }
+ }
+ });
+ lbl_paeFile.setFont(VERDANA_10);
JScrollPane scrl_foundStructures = new JScrollPane(tbl_summary);
scrl_foundStructures.setPreferredSize(new Dimension(width, height));
targetView.setVisible(false);
- JPanel actionsPanel = new JPanel(new MigLayout());
+ actionsPanel = new JPanel(new MigLayout());
actionsPanel.add(targetView, "left");
actionsPanel.add(btn_add, "wrap");
actionsPanel.add(chk_superpose, "left");
pnl_main.add(pnl_controls, BorderLayout.CENTER);
lbl_loading.setVisible(false);
- JPanel pnl_fileChooser = new JPanel(new FlowLayout());
- pnl_fileChooser.add(btn_pdbFromFile);
- pnl_fileChooser.add(lbl_fromFileStatus);
+ // JPanel pnl_fileChooser = new JPanel(new FlowLayout());
+ // pnl_fileChooser.add(btn_pdbFromFile);
+ // pnl_fileChooser.add(lbl_fromFileStatus);
+
+ JPanel pnl_fileOptions = new JPanel();
+ pnl_fileOptions.setLayout(new GridBagLayout());
+ GridBagConstraints gbc = new GridBagConstraints();
+ gbc.gridx = 0;
+ gbc.gridy = 0;
+ gbc.weightx = 0.0;
+ gbc.weighty = 0.0;
+ gbc.insets = new Insets(0, 0, 2, 0);
+ gbc.fill = GridBagConstraints.NONE;
+ gbc.anchor = GridBagConstraints.FIRST_LINE_START;
+ // pnl_fileOptions.add(pnl_fileChooser, gbc);
+ pnl_fileOptions.add(btn_pdbFromFile, gbc);
+ gbc.gridy++;
+ gbc.insets = new Insets(0, 0, 18, 0);
+ pnl_fileOptions.add(lbl_pdbFile, gbc);
+ gbc.gridy++;
+
+ gbc.insets = new Insets(0, 0, 2, 0);
+ pnl_fileOptions.add(new JLabel(
+ MessageManager.getString("label.structure_import_options")),
+ gbc);
+ gbc.gridy++;
+
+ gbc.insets = new Insets(0, 0, 6, 0);
+ pnl_fileOptions.add(lbl_chooseTempFacType, gbc);
+ gbc.gridy++;
+ gbc.insets = new Insets(0, 0, 18, 0);
+ pnl_fileOptions.add(combo_tempFacAs, gbc);
+ gbc.gridy++;
+ gbc.insets = new Insets(0, 0, 6, 0);
+ pnl_fileOptions.add(btn_paeMatrixFile, gbc);
+ gbc.gridy++;
+ gbc.insets = new Insets(0, 0, 2, 0);
+ gbc.weighty = 1.0;
+ pnl_fileOptions.add(lbl_paeFile, gbc);
+
JPanel pnl_fileChooserBL = new JPanel(new BorderLayout());
- pnl_fileChooserBL.add(fileChooserAssSeqPanel, BorderLayout.NORTH);
- pnl_fileChooserBL.add(pnl_fileChooser, BorderLayout.CENTER);
+ pnl_fileChooserBL.add(fileChooserAssSeqPanel, BorderLayout.PAGE_START);
+ pnl_fileChooserBL.add(pnl_fileOptions, BorderLayout.CENTER);
JPanel pnl_idInput = new JPanel(new FlowLayout());
pnl_idInput.add(txt_search);
protected void closeAction(int preferredHeight)
{
- // System.out.println(">>>>>>>>>> closing internal frame!!!");
- // System.out.println("width : " + mainFrame.getWidth());
- // System.out.println("heigh : " + mainFrame.getHeight());
- // System.out.println("x : " + mainFrame.getX());
- // System.out.println("y : " + mainFrame.getY());
+ // jalview.bin.Console.outPrintln(">>>>>>>>>> closing internal frame!!!");
+ // jalview.bin.Console.outPrintln("width : " + mainFrame.getWidth());
+ // jalview.bin.Console.outPrintln("heigh : " + mainFrame.getHeight());
+ // jalview.bin.Console.outPrintln("x : " + mainFrame.getX());
+ // jalview.bin.Console.outPrintln("y : " + mainFrame.getY());
tempUserPrefs.put("structureChooser.width", pnl_filter.getWidth());
tempUserPrefs.put("structureChooser.height", preferredHeight);
tempUserPrefs.put("structureChooser.x", mainFrame.getX());
protected abstract void pdbFromFile_actionPerformed();
+ protected abstract void paeMatrixFile_actionPerformed();
+
protected abstract void txt_search_ActionPerformed();
protected abstract void populateCmbAssociateSeqOptions(
{
return mainFrame;
}
+
+ public void setPdbOptionsEnabled(boolean b)
+ {
+ lbl_chooseTempFacType.setEnabled(b);
+ combo_tempFacAs.setEnabled(b);
+ btn_paeMatrixFile.setEnabled(b);
+ lbl_paeFile.setEnabled(b);
+ }
}
git://source.jalview.org / jalview.git / blobdiff