JAL-1645 source formatting and organise imports

[jalview.git] / src / jalview / jbgui / GStructureChooser.java

diff --git a/src/jalview/jbgui/GStructureChooser.java b/src/jalview/jbgui/GStructureChooser.java
index 2c51b3d..c4043c4 100644 (file)
--- a/src/jalview/jbgui/GStructureChooser.java
+++ b/src/jalview/jbgui/GStructureChooser.java
@@ -75,7 +75,7 @@ public abstract class GStructureChooser extends JPanel implements
   protected JComboBox<FilterOption> cmb_filterOption = new JComboBox<FilterOption>();
 
   protected AlignmentPanel ap;
-  
+
   protected StringBuilder errorWarning = new StringBuilder();
 
   protected JLabel lbl_result = new JLabel(
@@ -136,7 +136,6 @@ public abstract class GStructureChooser extends JPanel implements
 
   protected JLabel lbl_fromFileStatus = new JLabel(errorImage);
 
-
   protected AssciateSeqPanel idInputAssSeqPanel = new AssciateSeqPanel();
 
   protected AssciateSeqPanel fileChooserAssSeqPanel = new AssciateSeqPanel();
@@ -174,8 +173,7 @@ public abstract class GStructureChooser extends JPanel implements
     }
   };
 
-  protected JScrollPane scrl_foundStructures = new JScrollPane(
-          tbl_summary);
+  protected JScrollPane scrl_foundStructures = new JScrollPane(tbl_summary);
 
   protected JTable tbl_local_pdb = new JTable();
 
@@ -187,6 +185,7 @@ public abstract class GStructureChooser extends JPanel implements
           PreferenceSource.STRUCTURE_CHOOSER);
 
   protected PDBDocField[] previousWantedFields;
+
   public GStructureChooser()
   {
     try
@@ -306,7 +305,6 @@ public abstract class GStructureChooser extends JPanel implements
     pnl_main.add(chk_invertFilter);
     lbl_loading.setVisible(false);
 
-
     pnl_fileChooser.add(btn_pdbFromFile);
     pnl_fileChooser.add(lbl_fromFileStatus);
     pnl_fileChooserBL.add(fileChooserAssSeqPanel, BorderLayout.NORTH);
@@ -316,7 +314,7 @@ public abstract class GStructureChooser extends JPanel implements
     pnl_idInput.add(lbl_pdbManualFetchStatus);
     pnl_idInputBL.add(idInputAssSeqPanel, BorderLayout.NORTH);
     pnl_idInputBL.add(pnl_idInput, BorderLayout.CENTER);
-    
+
     final String foundStructureSummary = MessageManager
             .getString("label.found_structures_summary");
     final String configureCols = MessageManager
@@ -328,8 +326,7 @@ public abstract class GStructureChooser extends JPanel implements
         JTabbedPane sourceTabbedPane = (JTabbedPane) changeEvent
                 .getSource();
         int index = sourceTabbedPane.getSelectedIndex();
-        if (sourceTabbedPane.getTitleAt(index)
-.equals(configureCols))
+        if (sourceTabbedPane.getTitleAt(index).equals(configureCols))
         {
           btn_view.setEnabled(false);
           btn_cancel.setEnabled(false);
@@ -356,14 +353,14 @@ public abstract class GStructureChooser extends JPanel implements
     pnl_filter.setPreferredSize(new Dimension(500, 300));
     pnl_filter.add(foundStructureSummary, scrl_foundStructures);
     pnl_filter.add(configureCols, pdbDocFieldPrefs);
-    
+
     pnl_locPDB.add(scrl_localPDB);
 
     pnl_switchableViews.add(pnl_fileChooserBL, VIEWS_FROM_FILE);
     pnl_switchableViews.add(pnl_idInputBL, VIEWS_ENTER_ID);
     pnl_switchableViews.add(pnl_filter, VIEWS_FILTER);
     pnl_switchableViews.add(pnl_locPDB, VIEWS_LOCAL_PDB);
-    
+
     this.setLayout(mainLayout);
     this.add(pnl_main, java.awt.BorderLayout.NORTH);
     this.add(pnl_switchableViews, java.awt.BorderLayout.CENTER);
@@ -387,7 +384,7 @@ public abstract class GStructureChooser extends JPanel implements
             previousWantedFields) ? false : true;
 
   }
-  
+
   @Override
   /**
    * Event listener for the 'filter' combo-box and 'invert' check-box
@@ -464,6 +461,7 @@ public abstract class GStructureChooser extends JPanel implements
   public class AssociateSeqOptions
   {
     private SequenceI sequence;
+
     private String name;
 
     public AssociateSeqOptions(SequenceI seq)