package jalview.jbgui;
+import jalview.datamodel.SequenceI;
import jalview.gui.AlignmentPanel;
import jalview.gui.Desktop;
+import jalview.gui.JvSwingUtils;
+import jalview.jbgui.PDBDocFieldPreferences.PreferenceSource;
import jalview.util.MessageManager;
-import jalview.ws.uimodel.PDBRestResponse.PDBResponseSummary;
+import jalview.ws.dbsources.PDBRestClient;
+import jalview.ws.dbsources.PDBRestClient.PDBDocField;
import java.awt.BorderLayout;
import java.awt.CardLayout;
import java.awt.event.ActionEvent;
import java.awt.event.ItemEvent;
import java.awt.event.ItemListener;
+import java.awt.event.MouseAdapter;
+import java.awt.event.MouseEvent;
+import java.util.Arrays;
import javax.swing.ImageIcon;
import javax.swing.JButton;
import javax.swing.JFrame;
import javax.swing.JInternalFrame;
import javax.swing.JLabel;
-import javax.swing.JList;
import javax.swing.JPanel;
import javax.swing.JScrollPane;
+import javax.swing.JTabbedPane;
import javax.swing.JTable;
import javax.swing.JTextField;
-import javax.swing.ListSelectionModel;
+import javax.swing.event.ChangeEvent;
+import javax.swing.event.ChangeListener;
+import javax.swing.event.DocumentEvent;
+import javax.swing.event.DocumentListener;
@SuppressWarnings("serial")
/**
protected AlignmentPanel ap;
+ protected StringBuilder errorWarning = new StringBuilder();
+
protected JLabel lbl_result = new JLabel(
- MessageManager.getString("label.select") /* "Select : " */);
+ MessageManager.getString("label.select"));
- protected JButton btn_ok = new JButton();
+ protected JButton btn_view = new JButton();
protected JButton btn_cancel = new JButton();
protected JButton btn_pdbFromFile = new JButton();
- protected JTextField txt_search = new JTextField(18);
+ protected JTextField txt_search = new JTextField(14);
private JPanel pnl_actions = new JPanel();
- private JPanel pnl_filter = new JPanel();
+ private JPanel pnl_main = new JPanel();
+
+ private JPanel pnl_idInput = new JPanel(new FlowLayout());
+
+ private JPanel pnl_fileChooser = new JPanel(new FlowLayout());
- private JPanel pnl_idInput = new JPanel();
+ private JPanel pnl_idInputBL = new JPanel(new BorderLayout());
- private JPanel pnl_fileChooser = new JPanel();
+ private JPanel pnl_fileChooserBL = new JPanel(new BorderLayout());
+
+ private JPanel pnl_locPDB = new JPanel(new BorderLayout());
protected JPanel pnl_switchableViews = new JPanel(new CardLayout());
protected ImageIcon loadingImage = new ImageIcon(getClass().getResource(
"/images/loading.gif"));
+ protected ImageIcon goodImage = new ImageIcon(getClass().getResource(
+ "/images/good.png"));
+
+ protected ImageIcon errorImage = new ImageIcon(getClass().getResource(
+ "/images/error.png"));
+
+ protected ImageIcon warningImage = new ImageIcon(getClass().getResource(
+ "/images/warning.gif"));
+
+ protected JLabel lbl_warning = new JLabel(warningImage);
+
protected JLabel lbl_loading = new JLabel(loadingImage);
+ protected JLabel lbl_pdbManualFetchStatus = new JLabel(errorImage);
+
+ protected JLabel lbl_fromFileStatus = new JLabel(errorImage);
+
+ protected AssciateSeqPanel idInputAssSeqPanel = new AssciateSeqPanel();
+
+ protected AssciateSeqPanel fileChooserAssSeqPanel = new AssciateSeqPanel();
+
protected static final String VIEWS_FILTER = "VIEWS_FILTER";
protected static final String VIEWS_FROM_FILE = "VIEWS_FROM_FILE";
protected static final String VIEWS_ENTER_ID = "VIEWS_ENTER_ID";
- protected JList<PDBResponseSummary> jList_FoundStructures = new JList<PDBResponseSummary>();
+ protected static final String VIEWS_LOCAL_PDB = "VIEWS_LOCAL_PDB";
+
+ protected JTable tbl_summary = new JTable()
+ {
+ public String getToolTipText(MouseEvent evt)
+ {
+ String toolTipText = null;
+ java.awt.Point pnt = evt.getPoint();
+ int rowIndex = rowAtPoint(pnt);
+ int colIndex = columnAtPoint(pnt);
+
+ try
+ {
+ toolTipText = getValueAt(rowIndex, colIndex).toString();
+ } catch (Exception e)
+ {
+ e.printStackTrace();
+ }
+ toolTipText = (toolTipText == null ? null
+ : (toolTipText.length() > 500 ? JvSwingUtils.wrapTooltip(
+ true, "\"" + toolTipText.subSequence(0, 500)
+ + "...\"") : JvSwingUtils.wrapTooltip(true,
+ toolTipText)));
+ return toolTipText;
+ }
+ };
+
+ protected JScrollPane scrl_foundStructures = new JScrollPane(tbl_summary);
+
+ protected JTable tbl_local_pdb = new JTable();
- protected JTable tbl_summary = new JTable();
+ protected JScrollPane scrl_localPDB = new JScrollPane(tbl_local_pdb);
- protected JScrollPane scrl_foundStructures = new JScrollPane(
- tbl_summary);
+ private JTabbedPane pnl_filter = new JTabbedPane();
+
+ private PDBDocFieldPreferences pdbDocFieldPrefs = new PDBDocFieldPreferences(
+ PreferenceSource.STRUCTURE_CHOOSER);
+
+ protected PDBDocField[] previousWantedFields;
public GStructureChooser()
{
*/
private void jbInit() throws Exception
{
- btn_ok.setFont(new java.awt.Font("Verdana", 0, 12));
- btn_ok.setText(MessageManager.getString("action.view"));
- btn_ok.addActionListener(new java.awt.event.ActionListener()
+ tbl_summary.setAutoCreateRowSorter(true);
+ tbl_summary.getTableHeader().setReorderingAllowed(false);
+ tbl_local_pdb.setAutoCreateRowSorter(true);
+ tbl_local_pdb.getTableHeader().setReorderingAllowed(false);
+ tbl_local_pdb.addMouseListener(new MouseAdapter()
+ {
+ public void mouseClicked(MouseEvent e)
+ {
+ updateCurrentView();
+ }
+
+ public void mouseReleased(MouseEvent e)
+ {
+ updateCurrentView();
+ }
+ });
+
+ btn_view.setFont(new java.awt.Font("Verdana", 0, 12));
+ btn_view.setText(MessageManager.getString("action.view"));
+ btn_view.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
{
btn_pdbFromFile.setFont(new java.awt.Font("Verdana", 0, 12));
String btn_title = MessageManager.getString("label.select_pdb_file");
- btn_pdbFromFile.setText(" " + btn_title + " ");
+ btn_pdbFromFile.setText(btn_title + " ");
btn_pdbFromFile.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
}
});
- jList_FoundStructures
- .setSelectionMode(ListSelectionModel.MULTIPLE_INTERVAL_SELECTION);
- jList_FoundStructures.setLayoutOrientation(JList.VERTICAL);
- jList_FoundStructures.setVisibleRowCount(-1);
scrl_foundStructures.setPreferredSize(new Dimension(500, 300));
scrl_foundStructures
.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_NEVER);
+ scrl_localPDB.setPreferredSize(new Dimension(500, 300));
+ scrl_localPDB
+ .setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_NEVER);
+
cmb_filterOption.setFont(new java.awt.Font("Verdana", 0, 12));
chk_invertFilter.setFont(new java.awt.Font("Verdana", 0, 12));
chk_rememberSettings.setFont(new java.awt.Font("Verdana", 0, 12));
+ chk_rememberSettings.setVisible(false);
+
+ txt_search.setToolTipText(MessageManager
+ .getString("label.enter_pdb_id"));
+ cmb_filterOption.setToolTipText(MessageManager
+ .getString("info.select_filter_option"));
+ txt_search.getDocument().addDocumentListener(new DocumentListener()
+ {
+ @Override
+ public void insertUpdate(DocumentEvent e)
+ {
+ txt_search_ActionPerformed();
+ }
+
+ @Override
+ public void removeUpdate(DocumentEvent e)
+ {
+ txt_search_ActionPerformed();
+ }
+
+ @Override
+ public void changedUpdate(DocumentEvent e)
+ {
+ txt_search_ActionPerformed();
+ }
+ });
cmb_filterOption.addItemListener(this);
chk_invertFilter.addItemListener(this);
pnl_actions.add(chk_rememberSettings);
- pnl_actions.add(btn_ok);
+ pnl_actions.add(btn_view);
pnl_actions.add(btn_cancel);
- pnl_filter.add(lbl_result);
- pnl_filter.add(cmb_filterOption);
+ // pnl_filter.add(lbl_result);
+ pnl_main.add(cmb_filterOption);
+ pnl_main.add(lbl_loading);
+ pnl_main.add(chk_invertFilter);
lbl_loading.setVisible(false);
- pnl_filter.add(lbl_loading);
-
- pnl_filter.add(chk_invertFilter);
+ pnl_fileChooser.add(btn_pdbFromFile);
+ pnl_fileChooser.add(lbl_fromFileStatus);
+ pnl_fileChooserBL.add(fileChooserAssSeqPanel, BorderLayout.NORTH);
+ pnl_fileChooserBL.add(pnl_fileChooser, BorderLayout.CENTER);
- pnl_idInput.setLayout(new FlowLayout());
pnl_idInput.add(txt_search);
+ pnl_idInput.add(lbl_pdbManualFetchStatus);
+ pnl_idInputBL.add(idInputAssSeqPanel, BorderLayout.NORTH);
+ pnl_idInputBL.add(pnl_idInput, BorderLayout.CENTER);
+
+ final String foundStructureSummary = MessageManager
+ .getString("label.found_structures_summary");
+ final String configureCols = MessageManager
+ .getString("label.configure_displayed_columns");
+ ChangeListener changeListener = new ChangeListener()
+ {
+ public void stateChanged(ChangeEvent changeEvent)
+ {
+ JTabbedPane sourceTabbedPane = (JTabbedPane) changeEvent
+ .getSource();
+ int index = sourceTabbedPane.getSelectedIndex();
+ if (sourceTabbedPane.getTitleAt(index).equals(configureCols))
+ {
+ btn_view.setEnabled(false);
+ btn_cancel.setEnabled(false);
+ previousWantedFields = PDBDocFieldPreferences
+ .getStructureSummaryFields().toArray(
+ new PDBRestClient.PDBDocField[0]);
+ }
+ if (sourceTabbedPane.getTitleAt(index)
+ .equals(foundStructureSummary))
+ {
+ btn_cancel.setEnabled(true);
+ if (wantedFieldsUpdated())
+ {
+ tabRefresh();
+ }
+ else
+ {
+ validateSelections();
+ }
+ }
+ }
+ };
+ pnl_filter.addChangeListener(changeListener);
+ pnl_filter.setPreferredSize(new Dimension(500, 300));
+ pnl_filter.add(foundStructureSummary, scrl_foundStructures);
+ pnl_filter.add(configureCols, pdbDocFieldPrefs);
- pnl_fileChooser.setLayout(new FlowLayout());
- pnl_fileChooser.add(btn_pdbFromFile);
+ pnl_locPDB.add(scrl_localPDB);
+
+ pnl_switchableViews.add(pnl_fileChooserBL, VIEWS_FROM_FILE);
+ pnl_switchableViews.add(pnl_idInputBL, VIEWS_ENTER_ID);
+ pnl_switchableViews.add(pnl_filter, VIEWS_FILTER);
+ pnl_switchableViews.add(pnl_locPDB, VIEWS_LOCAL_PDB);
- pnl_switchableViews.add(pnl_fileChooser, VIEWS_FROM_FILE);
- pnl_switchableViews.add(pnl_idInput, VIEWS_ENTER_ID);
- pnl_switchableViews.add(scrl_foundStructures, VIEWS_FILTER);
-
this.setLayout(mainLayout);
- this.add(pnl_filter, java.awt.BorderLayout.NORTH);
+ this.add(pnl_main, java.awt.BorderLayout.NORTH);
this.add(pnl_switchableViews, java.awt.BorderLayout.CENTER);
this.add(pnl_actions, java.awt.BorderLayout.SOUTH);
Desktop.addInternalFrame(mainFrame, frameTitle, 800, 400);
}
-
+ public boolean wantedFieldsUpdated()
+ {
+ if (previousWantedFields == null)
+ {
+ return true;
+ }
+
+ return Arrays.equals(PDBDocFieldPreferences.getStructureSummaryFields()
+ .toArray(new PDBRestClient.PDBDocField[0]),
+ previousWantedFields) ? false : true;
+
+ }
+
@Override
/**
* Event listener for the 'filter' combo-box and 'invert' check-box
}
}
+ /**
+ * This inner class provides the provides the data model for associate
+ * sequence combo-box - cmb_assSeq
+ *
+ * @author tcnofoegbu
+ *
+ */
+ public class AssociateSeqOptions
+ {
+ private SequenceI sequence;
+
+ private String name;
+
+ public AssociateSeqOptions(SequenceI seq)
+ {
+ this.sequence = seq;
+ this.name = (seq.getName().length() >= 23) ? seq.getName().substring(
+ 0, 23) : seq.getName();
+ }
+
+ public AssociateSeqOptions(String name, SequenceI seq)
+ {
+ this.name = name;
+ this.sequence = seq;
+ }
+
+ public String toString()
+ {
+ return name;
+ }
+
+ public String getName()
+ {
+ return name;
+ }
+
+ public void setName(String name)
+ {
+ this.name = name;
+ }
+
+ public SequenceI getSequence()
+ {
+ return sequence;
+ }
+
+ public void setSequence(SequenceI sequence)
+ {
+ this.sequence = sequence;
+ }
+
+ }
+
+ /**
+ * This inner class holds the Layout and configuration of the panel which
+ * handles association of manually fetched structures to a unique sequence
+ * when more than one sequence selection is made
+ *
+ * @author tcnofoegbu
+ *
+ */
+ public class AssciateSeqPanel extends JPanel implements ItemListener
+ {
+ private JComboBox<AssociateSeqOptions> cmb_assSeq = new JComboBox<AssociateSeqOptions>();
+
+ private JLabel lbl_associateSeq = new JLabel();
+
+ public AssciateSeqPanel()
+ {
+ this.setLayout(new FlowLayout());
+ this.add(cmb_assSeq);
+ this.add(lbl_associateSeq);
+ cmb_assSeq.setToolTipText(MessageManager
+ .getString("info.associate_wit_sequence"));
+ cmb_assSeq.addItemListener(this);
+ }
+
+ public void loadCmbAssSeq()
+ {
+ populateCmbAssociateSeqOptions(cmb_assSeq, lbl_associateSeq);
+ }
+
+ public JComboBox<AssociateSeqOptions> getCmb_assSeq()
+ {
+ return cmb_assSeq;
+ }
+
+ public void setCmb_assSeq(JComboBox<AssociateSeqOptions> cmb_assSeq)
+ {
+ this.cmb_assSeq = cmb_assSeq;
+ }
+
+ @Override
+ public void itemStateChanged(ItemEvent e)
+ {
+ if (e.getStateChange() == ItemEvent.SELECTED)
+ {
+ cmbAssSeqStateChanged();
+ }
+ }
+ }
+
public JComboBox<FilterOption> getCmbFilterOption()
{
return cmb_filterOption;
protected abstract void updateCurrentView();
- protected abstract void ok_ActionPerformed();
-
protected abstract void populateFilterComboBox();
+ protected abstract void ok_ActionPerformed();
+
protected abstract void pdbFromFile_actionPerformed();
+
+ protected abstract void txt_search_ActionPerformed();
+
+ public abstract void populateCmbAssociateSeqOptions(
+ JComboBox<AssociateSeqOptions> cmb_assSeq, JLabel lbl_associateSeq);
+
+ public abstract void cmbAssSeqStateChanged();
+
+ public abstract void tabRefresh();
+
+ public abstract void validateSelections();
}
git://source.jalview.org / jalview.git / blobdiff