Merge branch 'releases/Release_2_11_3_Branch'

[jalview.git] / src / jalview / jbgui / GStructureViewer.java

diff --git a/src/jalview/jbgui/GStructureViewer.java b/src/jalview/jbgui/GStructureViewer.java
index 5c7a31a..fceb50c 100644 (file)
--- a/src/jalview/jbgui/GStructureViewer.java
+++ b/src/jalview/jbgui/GStructureViewer.java
@@ -20,10 +20,6 @@
  */
 package jalview.jbgui;
 
-import jalview.api.structures.JalviewStructureDisplayI;
-import jalview.gui.ColourMenuHelper.ColourChangeListener;
-import jalview.util.MessageManager;
-
 import java.awt.BorderLayout;
 import java.awt.GridLayout;
 import java.awt.event.ActionEvent;
@@ -37,8 +33,14 @@ import javax.swing.JMenuItem;
 import javax.swing.JPanel;
 import javax.swing.JRadioButtonMenuItem;
 
-public abstract class GStructureViewer extends JInternalFrame implements
-        JalviewStructureDisplayI, ColourChangeListener
+import jalview.api.structures.JalviewStructureDisplayI;
+import jalview.gui.ColourMenuHelper.ColourChangeListener;
+import jalview.util.ImageMaker.TYPE;
+import jalview.util.MessageManager;
+
+@SuppressWarnings("serial")
+public abstract class GStructureViewer extends JInternalFrame
+        implements JalviewStructureDisplayI, ColourChangeListener
 {
   // private AAStructureBindingModel bindingModel;
 
@@ -50,6 +52,8 @@ public abstract class GStructureViewer extends JInternalFrame implements
 
   protected JMenu chainMenu;
 
+  protected JMenu hetatmMenu;
+
   protected JMenu viewerActionMenu;
 
   protected JMenuItem alignStructs;
@@ -86,6 +90,9 @@ public abstract class GStructureViewer extends JInternalFrame implements
 
   private void jbInit() throws Exception
   {
+    setFrameIcon(null);
+    setName("jalview-structureviewer");
+
     JMenuBar menuBar = new JMenuBar();
     this.setJMenuBar(menuBar);
 
@@ -93,7 +100,8 @@ public abstract class GStructureViewer extends JInternalFrame implements
     fileMenu.setText(MessageManager.getString("action.file"));
 
     savemenu = new JMenu();
-    savemenu.setActionCommand(MessageManager.getString("action.save_image"));
+    savemenu.setActionCommand(
+            MessageManager.getString("action.save_image"));
     savemenu.setText(MessageManager.getString("action.save_as"));
 
     JMenuItem pdbFile = new JMenuItem();
@@ -103,7 +111,7 @@ public abstract class GStructureViewer extends JInternalFrame implements
       @Override
       public void actionPerformed(ActionEvent actionEvent)
       {
-        pdbFile_actionPerformed(actionEvent);
+        pdbFile_actionPerformed();
       }
     });
 
@@ -114,7 +122,7 @@ public abstract class GStructureViewer extends JInternalFrame implements
       @Override
       public void actionPerformed(ActionEvent actionEvent)
       {
-        png_actionPerformed(actionEvent);
+        makePDBImage(TYPE.PNG);
       }
     });
 
@@ -125,7 +133,7 @@ public abstract class GStructureViewer extends JInternalFrame implements
       @Override
       public void actionPerformed(ActionEvent actionEvent)
       {
-        eps_actionPerformed(actionEvent);
+        makePDBImage(TYPE.EPS);
       }
     });
 
@@ -136,7 +144,7 @@ public abstract class GStructureViewer extends JInternalFrame implements
       @Override
       public void actionPerformed(ActionEvent actionEvent)
       {
-        viewMapping_actionPerformed(actionEvent);
+        viewMapping_actionPerformed();
       }
     });
 
@@ -146,6 +154,9 @@ public abstract class GStructureViewer extends JInternalFrame implements
     chainMenu = new JMenu();
     chainMenu.setText(MessageManager.getString("action.show_chain"));
 
+    hetatmMenu = new JMenu();
+    hetatmMenu.setText(MessageManager.getString("action.show_hetatm"));
+
     fitToWindow = new JMenuItem();
     fitToWindow.setText(MessageManager.getString("label.fit_to_window"));
     fitToWindow.addActionListener(new ActionListener()
@@ -160,24 +171,23 @@ public abstract class GStructureViewer extends JInternalFrame implements
     JMenu helpMenu = new JMenu();
     helpMenu.setText(MessageManager.getString("action.help"));
     helpItem = new JMenuItem();
-    helpItem.setText(MessageManager.getString("label.jmol_help"));
     helpItem.addActionListener(new ActionListener()
     {
       @Override
       public void actionPerformed(ActionEvent actionEvent)
       {
-        showHelp_actionPerformed(actionEvent);
+        showHelp_actionPerformed();
       }
     });
     alignStructs = new JMenuItem();
-    alignStructs.setText(MessageManager
-            .getString("label.superpose_structures"));
+    alignStructs.setText(
+            MessageManager.getString("label.superpose_structures"));
     alignStructs.addActionListener(new ActionListener()
     {
       @Override
       public void actionPerformed(ActionEvent actionEvent)
       {
-        alignStructs_actionPerformed(actionEvent);
+        alignStructsWithAllAlignPanels();
       }
     });
 
@@ -192,6 +202,7 @@ public abstract class GStructureViewer extends JInternalFrame implements
     savemenu.add(png);
     savemenu.add(eps);
     viewMenu.add(chainMenu);
+    viewMenu.add(hetatmMenu);
     helpMenu.add(helpItem);
 
     menuBar.add(fileMenu);
@@ -209,61 +220,55 @@ public abstract class GStructureViewer extends JInternalFrame implements
 
   protected void fitToWindow_actionPerformed()
   {
+    getBinding().focusView();
   }
 
   protected void highlightSelection_actionPerformed()
   {
   }
 
-  protected void viewerColour_actionPerformed(ActionEvent actionEvent)
-  {
-  }
-
-  protected void alignStructs_actionPerformed(ActionEvent actionEvent)
+  protected void viewerColour_actionPerformed()
   {
   }
 
-  public void pdbFile_actionPerformed(ActionEvent actionEvent)
-  {
-
-  }
+  protected abstract String alignStructsWithAllAlignPanels();
 
-  public void png_actionPerformed(ActionEvent actionEvent)
+  public void pdbFile_actionPerformed()
   {
 
   }
 
-  public void eps_actionPerformed(ActionEvent actionEvent)
+  public void makePDBImage(TYPE imageType)
   {
 
   }
 
-  public void viewMapping_actionPerformed(ActionEvent actionEvent)
+  public void viewMapping_actionPerformed()
   {
 
   }
 
-  public void seqColour_actionPerformed(ActionEvent actionEvent)
+  public void seqColour_actionPerformed()
   {
 
   }
 
-  public void chainColour_actionPerformed(ActionEvent actionEvent)
+  public void chainColour_actionPerformed()
   {
 
   }
 
-  public void chargeColour_actionPerformed(ActionEvent actionEvent)
+  public void chargeColour_actionPerformed()
   {
 
   }
 
-  public void background_actionPerformed(ActionEvent actionEvent)
+  public void background_actionPerformed()
   {
 
   }
 
-  public void showHelp_actionPerformed(ActionEvent actionEvent)
+  public void showHelp_actionPerformed()
   {
 
   }