+++ /dev/null
-/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- */
-package jalview.jbgui;
-
-import jalview.ws.dbsources.PDBRestClient.PDBDocField;
-import jalview.ws.dbsources.PDBRestClient.PDBDocField.Group;
-
-import java.util.ArrayList;
-import java.util.Collection;
-import java.util.Comparator;
-import java.util.HashMap;
-import java.util.LinkedHashSet;
-import java.util.List;
-
-import javax.swing.JScrollPane;
-import javax.swing.JTable;
-import javax.swing.RowSorter;
-import javax.swing.SortOrder;
-import javax.swing.table.AbstractTableModel;
-import javax.swing.table.TableModel;
-import javax.swing.table.TableRowSorter;
-
-
-@SuppressWarnings("serial")
-public class PDBDocFieldPreferences extends JScrollPane
-{
- protected JTable tbl_pdbDocFieldConfig = new JTable();
-
- protected JScrollPane scrl_pdbDocFieldConfig = new JScrollPane(
- tbl_pdbDocFieldConfig);
-
- private HashMap<String, PDBDocField> map = new HashMap<String, PDBDocField>();
-
- private static Collection<PDBDocField> searchSummaryFields = new LinkedHashSet<PDBDocField>();
-
- private static Collection<PDBDocField> structureSummaryFields = new LinkedHashSet<PDBDocField>();
-
- public enum PreferenceSource
- {
- SEARCH_SUMMARY, STRUCTURE_CHOOSER, PREFERENCES;
- }
-
- private PreferenceSource currentSource;
-
- static
- {
- searchSummaryFields.add(PDBDocField.PDB_ID);
- searchSummaryFields.add(PDBDocField.TITLE);
- searchSummaryFields.add(PDBDocField.RESOLUTION);
-
- structureSummaryFields.add(PDBDocField.PDB_ID);
- structureSummaryFields.add(PDBDocField.TITLE);
- structureSummaryFields.add(PDBDocField.RESOLUTION);
- }
-
- public PDBDocFieldPreferences(PreferenceSource source)
- {
- tbl_pdbDocFieldConfig.setAutoCreateRowSorter(true);
-
-
-
- this.getViewport().add(tbl_pdbDocFieldConfig);
- this.currentSource = source;
-
- String[] columnNames = null;
- switch (source)
- {
- case SEARCH_SUMMARY:
- columnNames = new String[] { "", "Display", "Group" };
- break;
- case STRUCTURE_CHOOSER:
- columnNames = new String[] { "", "Display", "Group" };
- break;
- case PREFERENCES:
- columnNames = new String[] { "PDB Field", "Show in search summary",
- "Show in structure summary" };
- break;
- default:
- break;
- }
-
- Object[][] data = new Object[PDBDocField.values().length - 1][3];
- int x = 0;
- for (PDBDocField field : PDBDocField.values())
- {
- if (field.getName().equalsIgnoreCase("all"))
- {
- continue;
- }
-
- switch (source)
- {
- case SEARCH_SUMMARY:
- data[x++] = new Object[] { searchSummaryFields.contains(field),
- field.getName(), field.getGroup() };
- break;
- case STRUCTURE_CHOOSER:
- data[x++] = new Object[] { structureSummaryFields.contains(field),
- field.getName(), field.getGroup() };
- break;
- case PREFERENCES:
- data[x++] = new Object[] { field.getName(),
- searchSummaryFields.contains(field),
- structureSummaryFields.contains(field) };
- break;
- default:
- break;
- }
- map.put(field.getName(), field);
- }
-
- PDBFieldTableModel model = new PDBFieldTableModel(columnNames, data);
- tbl_pdbDocFieldConfig.setModel(model);
-
- switch (source)
- {
- case SEARCH_SUMMARY:
- case STRUCTURE_CHOOSER:
- tbl_pdbDocFieldConfig.getColumnModel().getColumn(0)
- .setPreferredWidth(30);
- tbl_pdbDocFieldConfig.getColumnModel().getColumn(0).setMinWidth(20);
- tbl_pdbDocFieldConfig.getColumnModel().getColumn(0).setMaxWidth(40);
- tbl_pdbDocFieldConfig.getColumnModel().getColumn(1)
- .setPreferredWidth(150);
- tbl_pdbDocFieldConfig.getColumnModel().getColumn(1).setMinWidth(150);
- tbl_pdbDocFieldConfig.getColumnModel().getColumn(2)
- .setPreferredWidth(150);
- tbl_pdbDocFieldConfig.getColumnModel().getColumn(2)
-.setMinWidth(150);
-
- TableRowSorter<TableModel> sorter = new TableRowSorter<>(
- tbl_pdbDocFieldConfig.getModel());
- tbl_pdbDocFieldConfig.setRowSorter(sorter);
- List<RowSorter.SortKey> sortKeys = new ArrayList<>();
- int columnIndexToSort = 2;
- sortKeys.add(new RowSorter.SortKey(columnIndexToSort,
- SortOrder.ASCENDING));
- sorter.setSortKeys(sortKeys);
- sorter.setComparator(
- columnIndexToSort,
- new Comparator<jalview.ws.dbsources.PDBRestClient.PDBDocField.Group>()
- {
- @Override
- public int compare(Group o1, Group o2)
- {
- return o1.getSortOrder() - o2.getSortOrder();
- }
- });
- sorter.sort();
-
- tbl_pdbDocFieldConfig
- .setAutoResizeMode(JTable.AUTO_RESIZE_NEXT_COLUMN);
- break;
- case PREFERENCES:
- default:
- break;
- }
-
- }
-
- public static Collection<PDBDocField> getSearchSummaryFields()
- {
- return searchSummaryFields;
- }
-
- public static void setSearchSummaryFields(
- Collection<PDBDocField> searchSummaryFields)
- {
- PDBDocFieldPreferences.searchSummaryFields = searchSummaryFields;
- }
-
- public static Collection<PDBDocField> getStructureSummaryFields()
- {
- return structureSummaryFields;
- }
-
- public static void setStructureSummaryFields(
- Collection<PDBDocField> structureSummaryFields)
- {
- PDBDocFieldPreferences.structureSummaryFields = structureSummaryFields;
- }
-
- class PDBFieldTableModel extends AbstractTableModel
- {
-
- public PDBFieldTableModel(String[] columnNames, Object[][] data)
- {
- this.data = data;
- this.columnNames = columnNames;
- }
-
- private Object[][] data;
-
- private String[] columnNames;
-
- @Override
- public int getColumnCount()
- {
- return columnNames.length;
- }
-
- @Override
- public int getRowCount()
- {
- return data.length;
- }
-
- @Override
- public String getColumnName(int col)
- {
- return columnNames[col];
- }
-
- @Override
- public Object getValueAt(int row, int col)
- {
- return data[row][col];
- }
-
- /*
- * JTable uses this method to determine the default renderer/ editor for
- * each cell. If we didn't implement this method, then the last column would
- * contain text ("true"/"false"), rather than a check box.
- */
- @Override
- public Class getColumnClass(int c)
- {
- return getValueAt(0, c).getClass();
- }
-
- /*
- * Don't need to implement this method unless your table's editable.
- */
- @Override
- public boolean isCellEditable(int row, int col)
- {
- // Note that the data/cell address is constant,
- // no matter where the cell appears onscreen.
- // !isPDBID(row, col) ensures the PDB_Id cell is never editable as it
- // serves as a unique id for each row.
- // return (col == 1 || col == 2) && !isPDBID(row, col);
- switch (currentSource)
- {
- case SEARCH_SUMMARY:
- case STRUCTURE_CHOOSER:
- return (col == 0) && !isPDBID(row, 1);
- case PREFERENCES:
- return (col == 1 || col == 2) && !isPDBID(row, 0);
- default:
- return false;
- }
-
- }
-
- /**
- * Determines whether the data in a given cell is a PDB ID.
- *
- * @param row
- * @param col
- * @return
- */
-
- public boolean isPDBID(int row, int col)
- {
- boolean matched = false;
- String name = getValueAt(row, col).toString();
- PDBDocField pdbField = map.get(name);
- if (pdbField == PDBDocField.PDB_ID)
- {
- matched = true;
- }
- return matched;
- }
-
- /*
- * Don't need to implement this method unless your table's data can change.
- */
- @Override
- public void setValueAt(Object value, int row, int col)
- {
- data[row][col] = value;
- fireTableCellUpdated(row, col);
-
- String name = null;
- switch (currentSource)
- {
- case SEARCH_SUMMARY:
- case STRUCTURE_CHOOSER:
- name = getValueAt(row, 1).toString();
- break;
- case PREFERENCES:
- name = getValueAt(row, 0).toString();
- break;
- default:
- break;
- }
- boolean selected = ((Boolean) value).booleanValue();
-
- PDBDocField pdbField = map.get(name);
-
- if (currentSource == PreferenceSource.SEARCH_SUMMARY)
- {
- updatePrefs(searchSummaryFields, pdbField, selected);
- }
- else if (currentSource == PreferenceSource.STRUCTURE_CHOOSER)
- {
- updatePrefs(structureSummaryFields, pdbField, selected);
- }
- else if (currentSource == PreferenceSource.PREFERENCES)
- {
- if (col == 1)
- {
- updatePrefs(searchSummaryFields, pdbField, selected);
- }
- else if (col == 2)
- {
- updatePrefs(structureSummaryFields, pdbField, selected);
- }
- }
- }
-
- private void updatePrefs(Collection<PDBDocField> prefConfig,
- PDBDocField pdbField, boolean selected)
- {
- if (prefConfig.contains(pdbField) && !selected)
- {
- prefConfig.remove(pdbField);
- }
-
- if (!prefConfig.contains(pdbField) && selected)
- {
- prefConfig.add(pdbField);
- }
- }
-
- }
-}
git://source.jalview.org / jalview.git / blobdiff