JAL-1831 added changes to allow auto-generation of BioJSON schema from src code

[jalview.git] / src / jalview / json / binding / biojson / v1 / SequenceGrpPojo.java

diff --git a/src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java b/src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java
new file mode 100644 (file)
index 0000000..63bc426
--- /dev/null
+++ b/src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java
@@ -0,0 +1,147 @@
+package jalview.json.binding.biojson.v1;
+
+import java.util.ArrayList;
+
+import com.github.reinert.jjschema.Attributes;
+
+public class SequenceGrpPojo
+{
+  @Attributes(required = true, description = "Serial version identifier for the <b>seqGroup</b> object model")
+  private String svid = "1.0";
+  
+  @Attributes(required = false, description = "The Colour Scheme applied to the Sequence Group")
+  private String colourScheme;
+
+  @Attributes(required = true, description = "The name assigned to the seqGroup")
+  private String groupName;
+
+  @Attributes(required = false, description = "Serial version identifier for the <b>seqGroup</b> object model")
+  private String description;
+
+  @Attributes(required = false, description = "Determines if the seqGroup border should be visible or not")
+  private boolean displayBoxes;
+
+  @Attributes(required = false, description = "Determines if the texts of the group is displayed or not")
+  private boolean displayText;
+
+  @Attributes(required = false, description = "Determines if the residues text for the group is coloured")
+  private boolean colourText;
+
+  @Attributes(required = false, description = "Boolean value indicating whether residues should only be shown <br/>that are different from current reference or consensus sequence")
+  private boolean showNonconserved;
+
+  @Attributes(required = true, description = "The index of the group’s first residue in the alignment space")
+  private int startRes;
+
+  @Attributes(required = true, description = "The index of the group’s last residue in the alignment space")
+  private int endRes;
+  
+  @Attributes(required = true, minItems = 1, maxItems = 1999999999, uniqueItems=true, description = "An array of the unique id's for the sequences belonging to the group")  
+  private ArrayList<String> sequenceRefs = new ArrayList<String>();
+
+  public String getColourScheme()
+  {
+    return colourScheme;
+  }
+
+  public void setColourScheme(String colourScheme)
+  {
+    this.colourScheme = colourScheme;
+  }
+
+  public String getGroupName()
+  {
+    return groupName;
+  }
+
+  public void setGroupName(String groupName)
+  {
+    this.groupName = groupName;
+  }
+
+  public String getDescription()
+  {
+    return description;
+  }
+
+  public void setDescription(String description)
+  {
+    this.description = description;
+  }
+
+  public boolean isDisplayBoxes()
+  {
+    return displayBoxes;
+  }
+
+  public void setDisplayBoxes(boolean displayBoxes)
+  {
+    this.displayBoxes = displayBoxes;
+  }
+
+  public boolean isDisplayText()
+  {
+    return displayText;
+  }
+
+  public void setDisplayText(boolean displayText)
+  {
+    this.displayText = displayText;
+  }
+
+  public boolean isColourText()
+  {
+    return colourText;
+  }
+
+  public void setColourText(boolean colourText)
+  {
+    this.colourText = colourText;
+  }
+
+  public boolean isShowNonconserved()
+  {
+    return showNonconserved;
+  }
+
+  public void setShowNonconserved(boolean showNonconserved)
+  {
+    this.showNonconserved = showNonconserved;
+  }
+
+  public int getStartRes()
+  {
+    return startRes;
+  }
+
+  public void setStartRes(int startRes)
+  {
+    this.startRes = startRes;
+  }
+
+  public int getEndRes()
+  {
+    return endRes;
+  }
+
+  public void setEndRes(int endRes)
+  {
+    this.endRes = endRes;
+  }
+
+  public ArrayList<String> getSequenceRefs()
+  {
+    return sequenceRefs;
+  }
+
+  public void setSequenceRefs(ArrayList<String> sequenceRefs)
+  {
+    this.sequenceRefs = sequenceRefs;
+  }
+
+  public String getSvid()
+  {
+    return svid;
+  }
+
+}