JAL-4392 Merging consensus secondary structure

[jalview.git] / src / jalview / project / Jalview2XML.java

diff --git a/src/jalview/project/Jalview2XML.java b/src/jalview/project/Jalview2XML.java
index 983b512..2f4052a 100644 (file)
--- a/src/jalview/project/Jalview2XML.java
+++ b/src/jalview/project/Jalview2XML.java
@@ -5309,6 +5309,8 @@ public class Jalview2XML
             view.isIgnoreGapsinConsensus());
     viewport.getResidueShading()
             .setConsensus(viewport.getSequenceConsensusHash());
+    viewport.getResidueShading()
+    .setSsConsensus(viewport.getSequenceSSConsensusHash());
     if (safeBoolean(view.isConservationSelected()) && cs != null)
     {
       viewport.getResidueShading()