{
// find bounds and set origin appopriately
// locate first visible position for this sequence
- int[] refbounds = av.getColumnSelection()
+ int[] refbounds = av.getAlignment().getHiddenColumns()
.locateVisibleBoundsOfSequence(refSeq);
refSp = refbounds[0];
{
if (refSeq == null)
{
- iadj = av.getColumnSelection().adjustForHiddenColumns(i - 1) + 1;
+ iadj = av.getAlignment().getHiddenColumns()
+ .adjustForHiddenColumns(i - 1) + 1;
string = String.valueOf(iadj);
}
else
{
- iadj = av.getColumnSelection().adjustForHiddenColumns(i - 1);
+ iadj = av.getAlignment().getHiddenColumns()
+ .adjustForHiddenColumns(i - 1);
refN = refSeq.findPosition(iadj);
// TODO show bounds if position is a gap
// - ie L--R -> "1L|2R" for