JAL-3178 include non-positional features in their group on export

[jalview.git] / src / jalview / schemabinding / version2 / AlcodonFrame.java

diff --git a/src/jalview/schemabinding/version2/AlcodonFrame.java b/src/jalview/schemabinding/version2/AlcodonFrame.java
index 73adbad..218e07e 100644 (file)
--- a/src/jalview/schemabinding/version2/AlcodonFrame.java
+++ b/src/jalview/schemabinding/version2/AlcodonFrame.java
@@ -1,31 +1,16 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *  
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
  */
+
 package jalview.schemabinding.version2;
 
 //---------------------------------/
 //- Imported classes and packages -/
 //---------------------------------/
 
-import jalview.util.MessageManager;
-
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
 
@@ -161,11 +146,9 @@ public class AlcodonFrame implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._alcodMapList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                 "getAlcodMap",
-                 Integer.valueOf(index).toString(),
-                 Integer.valueOf((this._alcodMapList.size() - 1)).toString()
-        })); 
+      throw new IndexOutOfBoundsException("getAlcodMap: Index value '"
+              + index + "' not in range [0.."
+              + (this._alcodMapList.size() - 1) + "]");
     }
 
     return (jalview.schemabinding.version2.AlcodMap) _alcodMapList
@@ -213,11 +196,9 @@ public class AlcodonFrame implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._alcodonList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                 "getAlcodon",
-                 Integer.valueOf(index).toString(),
-                 Integer.valueOf((this._alcodonList.size() - 1)).toString()
-        })); 
+      throw new IndexOutOfBoundsException("getAlcodon: Index value '"
+              + index + "' not in range [0.."
+              + (this._alcodonList.size() - 1) + "]");
     }
 
     return (jalview.schemabinding.version2.Alcodon) _alcodonList.get(index);
@@ -384,11 +365,9 @@ public class AlcodonFrame implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._alcodMapList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                         "setAlcodMap",
-                         Integer.valueOf(index).toString(),
-                         Integer.valueOf((this._alcodonList.size() - 1)).toString()
-          })); 
+      throw new IndexOutOfBoundsException("setAlcodMap: Index value '"
+              + index + "' not in range [0.."
+              + (this._alcodMapList.size() - 1) + "]");
     }
 
     this._alcodMapList.set(index, vAlcodMap);
@@ -426,11 +405,9 @@ public class AlcodonFrame implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._alcodonList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                 "setAlcodon",
-                 Integer.valueOf(index).toString(),
-                 Integer.valueOf((this._alcodonList.size() - 1)).toString()
-        })); 
+      throw new IndexOutOfBoundsException("setAlcodon: Index value '"
+              + index + "' not in range [0.."
+              + (this._alcodonList.size() - 1) + "]");
     }
 
     this._alcodonList.set(index, vAlcodon);