-/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)\r
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
- * \r
- * This file is part of Jalview.\r
- * \r
- * Jalview is free software: you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License \r
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
- * \r
- * Jalview is distributed in the hope that it will be useful, but \r
- * WITHOUT ANY WARRANTY; without even the implied warranty \r
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
- * PURPOSE. See the GNU General Public License for more details.\r
- * \r
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.\r
- */\r
-package jalview.schemabinding.version2;\r
-\r
-//---------------------------------/\r
-//- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.xml.Marshaller;\r
-import org.exolab.castor.xml.Unmarshaller;\r
-\r
-/**\r
- * Class Colour.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class Colour implements java.io.Serializable\r
-{\r
-\r
- // --------------------------/\r
- // - Class/Member Variables -/\r
- // --------------------------/\r
-\r
- /**\r
- * Field _name.\r
- */\r
- private java.lang.String _name;\r
-\r
- /**\r
- * Field _RGB.\r
- */\r
- private java.lang.String _RGB;\r
-\r
- /**\r
- * Field _minRGB.\r
- */\r
- private java.lang.String _minRGB;\r
-\r
- /**\r
- * loosely specified enumeration: NONE,ABOVE, or BELOW\r
- */\r
- private java.lang.String _threshType;\r
-\r
- /**\r
- * Field _threshold.\r
- */\r
- private float _threshold;\r
-\r
- /**\r
- * keeps track of state for field: _threshold\r
- */\r
- private boolean _has_threshold;\r
-\r
- /**\r
- * Field _max.\r
- */\r
- private float _max;\r
-\r
- /**\r
- * keeps track of state for field: _max\r
- */\r
- private boolean _has_max;\r
-\r
- /**\r
- * Field _min.\r
- */\r
- private float _min;\r
-\r
- /**\r
- * keeps track of state for field: _min\r
- */\r
- private boolean _has_min;\r
-\r
- /**\r
- * Field _colourByLabel.\r
- */\r
- private boolean _colourByLabel;\r
-\r
- /**\r
- * keeps track of state for field: _colourByLabel\r
- */\r
- private boolean _has_colourByLabel;\r
-\r
- /**\r
- * Field _autoScale.\r
- */\r
- private boolean _autoScale;\r
-\r
- /**\r
- * keeps track of state for field: _autoScale\r
- */\r
- private boolean _has_autoScale;\r
-\r
- // ----------------/\r
- // - Constructors -/\r
- // ----------------/\r
-\r
- public Colour()\r
- {\r
- super();\r
- }\r
-\r
- // -----------/\r
- // - Methods -/\r
- // -----------/\r
-\r
- /**\r
- */\r
- public void deleteAutoScale()\r
- {\r
- this._has_autoScale = false;\r
- }\r
-\r
- /**\r
- */\r
- public void deleteColourByLabel()\r
- {\r
- this._has_colourByLabel = false;\r
- }\r
-\r
- /**\r
- */\r
- public void deleteMax()\r
- {\r
- this._has_max = false;\r
- }\r
-\r
- /**\r
- */\r
- public void deleteMin()\r
- {\r
- this._has_min = false;\r
- }\r
-\r
- /**\r
- */\r
- public void deleteThreshold()\r
- {\r
- this._has_threshold = false;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'autoScale'.\r
- * \r
- * @return the value of field 'AutoScale'.\r
- */\r
- public boolean getAutoScale()\r
- {\r
- return this._autoScale;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'colourByLabel'.\r
- * \r
- * @return the value of field 'ColourByLabel'.\r
- */\r
- public boolean getColourByLabel()\r
- {\r
- return this._colourByLabel;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'max'.\r
- * \r
- * @return the value of field 'Max'.\r
- */\r
- public float getMax()\r
- {\r
- return this._max;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'min'.\r
- * \r
- * @return the value of field 'Min'.\r
- */\r
- public float getMin()\r
- {\r
- return this._min;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'minRGB'.\r
- * \r
- * @return the value of field 'MinRGB'.\r
- */\r
- public java.lang.String getMinRGB()\r
- {\r
- return this._minRGB;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'name'.\r
- * \r
- * @return the value of field 'Name'.\r
- */\r
- public java.lang.String getName()\r
- {\r
- return this._name;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'RGB'.\r
- * \r
- * @return the value of field 'RGB'.\r
- */\r
- public java.lang.String getRGB()\r
- {\r
- return this._RGB;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'threshType'. The field 'threshType' has the\r
- * following description: loosely specified enumeration: NONE,ABOVE, or BELOW\r
- * \r
- * @return the value of field 'ThreshType'.\r
- */\r
- public java.lang.String getThreshType()\r
- {\r
- return this._threshType;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'threshold'.\r
- * \r
- * @return the value of field 'Threshold'.\r
- */\r
- public float getThreshold()\r
- {\r
- return this._threshold;\r
- }\r
-\r
- /**\r
- * Method hasAutoScale.\r
- * \r
- * @return true if at least one AutoScale has been added\r
- */\r
- public boolean hasAutoScale()\r
- {\r
- return this._has_autoScale;\r
- }\r
-\r
- /**\r
- * Method hasColourByLabel.\r
- * \r
- * @return true if at least one ColourByLabel has been added\r
- */\r
- public boolean hasColourByLabel()\r
- {\r
- return this._has_colourByLabel;\r
- }\r
-\r
- /**\r
- * Method hasMax.\r
- * \r
- * @return true if at least one Max has been added\r
- */\r
- public boolean hasMax()\r
- {\r
- return this._has_max;\r
- }\r
-\r
- /**\r
- * Method hasMin.\r
- * \r
- * @return true if at least one Min has been added\r
- */\r
- public boolean hasMin()\r
- {\r
- return this._has_min;\r
- }\r
-\r
- /**\r
- * Method hasThreshold.\r
- * \r
- * @return true if at least one Threshold has been added\r
- */\r
- public boolean hasThreshold()\r
- {\r
- return this._has_threshold;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'autoScale'.\r
- * \r
- * @return the value of field 'AutoScale'.\r
- */\r
- public boolean isAutoScale()\r
- {\r
- return this._autoScale;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'colourByLabel'.\r
- * \r
- * @return the value of field 'ColourByLabel'.\r
- */\r
- public boolean isColourByLabel()\r
- {\r
- return this._colourByLabel;\r
- }\r
-\r
- /**\r
- * Method isValid.\r
- * \r
- * @return true if this object is valid according to the schema\r
- */\r
- public boolean isValid()\r
- {\r
- try\r
- {\r
- validate();\r
- } catch (org.exolab.castor.xml.ValidationException vex)\r
- {\r
- return false;\r
- }\r
- return true;\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param out\r
- * @throws org.exolab.castor.xml.MarshalException\r
- * if object is null or if any SAXException is thrown during\r
- * marshaling\r
- * @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the schema\r
- */\r
- public void marshal(final java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
- Marshaller.marshal(this, out);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param handler\r
- * @throws java.io.IOException\r
- * if an IOException occurs during marshaling\r
- * @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the schema\r
- * @throws org.exolab.castor.xml.MarshalException\r
- * if object is null or if any SAXException is thrown during\r
- * marshaling\r
- */\r
- public void marshal(final org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException,\r
- org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
- Marshaller.marshal(this, handler);\r
- }\r
-\r
- /**\r
- * Sets the value of field 'autoScale'.\r
- * \r
- * @param autoScale\r
- * the value of field 'autoScale'.\r
- */\r
- public void setAutoScale(final boolean autoScale)\r
- {\r
- this._autoScale = autoScale;\r
- this._has_autoScale = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'colourByLabel'.\r
- * \r
- * @param colourByLabel\r
- * the value of field 'colourByLabel'.\r
- */\r
- public void setColourByLabel(final boolean colourByLabel)\r
- {\r
- this._colourByLabel = colourByLabel;\r
- this._has_colourByLabel = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'max'.\r
- * \r
- * @param max\r
- * the value of field 'max'.\r
- */\r
- public void setMax(final float max)\r
- {\r
- this._max = max;\r
- this._has_max = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'min'.\r
- * \r
- * @param min\r
- * the value of field 'min'.\r
- */\r
- public void setMin(final float min)\r
- {\r
- this._min = min;\r
- this._has_min = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'minRGB'.\r
- * \r
- * @param minRGB\r
- * the value of field 'minRGB'.\r
- */\r
- public void setMinRGB(final java.lang.String minRGB)\r
- {\r
- this._minRGB = minRGB;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'name'.\r
- * \r
- * @param name\r
- * the value of field 'name'.\r
- */\r
- public void setName(final java.lang.String name)\r
- {\r
- this._name = name;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'RGB'.\r
- * \r
- * @param RGB\r
- * the value of field 'RGB'.\r
- */\r
- public void setRGB(final java.lang.String RGB)\r
- {\r
- this._RGB = RGB;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'threshType'. The field 'threshType' has the\r
- * following description: loosely specified enumeration: NONE,ABOVE, or BELOW\r
- * \r
- * @param threshType\r
- * the value of field 'threshType'.\r
- */\r
- public void setThreshType(final java.lang.String threshType)\r
- {\r
- this._threshType = threshType;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'threshold'.\r
- * \r
- * @param threshold\r
- * the value of field 'threshold'.\r
- */\r
- public void setThreshold(final float threshold)\r
- {\r
- this._threshold = threshold;\r
- this._has_threshold = true;\r
- }\r
-\r
- /**\r
- * Method unmarshal.\r
- * \r
- * @param reader\r
- * @throws org.exolab.castor.xml.MarshalException\r
- * if object is null or if any SAXException is thrown during\r
- * marshaling\r
- * @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the schema\r
- * @return the unmarshaled jalview.schemabinding.version2.Colour\r
- */\r
- public static jalview.schemabinding.version2.Colour unmarshal(\r
- final java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
- return (jalview.schemabinding.version2.Colour) Unmarshaller.unmarshal(\r
- jalview.schemabinding.version2.Colour.class, reader);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the schema\r
- */\r
- public void validate() throws org.exolab.castor.xml.ValidationException\r
- {\r
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
- validator.validate(this);\r
- }\r
-\r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.schemabinding.version2;
+
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * Class Colour.
+ *
+ * @version $Revision$ $Date$
+ */
+public class Colour implements java.io.Serializable
+{
+
+ // --------------------------/
+ // - Class/Member Variables -/
+ // --------------------------/
+
+ /**
+ * Field _name.
+ */
+ private java.lang.String _name;
+
+ /**
+ * Field _RGB.
+ */
+ private java.lang.String _RGB;
+
+ /**
+ * Field _minRGB.
+ */
+ private java.lang.String _minRGB;
+
+ /**
+ * loosely specified enumeration: NONE,ABOVE, or BELOW
+ */
+ private java.lang.String _threshType;
+
+ /**
+ * Field _threshold.
+ */
+ private float _threshold;
+
+ /**
+ * keeps track of state for field: _threshold
+ */
+ private boolean _has_threshold;
+
+ /**
+ * Field _max.
+ */
+ private float _max;
+
+ /**
+ * keeps track of state for field: _max
+ */
+ private boolean _has_max;
+
+ /**
+ * Field _min.
+ */
+ private float _min;
+
+ /**
+ * keeps track of state for field: _min
+ */
+ private boolean _has_min;
+
+ /**
+ * Field _colourByLabel.
+ */
+ private boolean _colourByLabel;
+
+ /**
+ * keeps track of state for field: _colourByLabel
+ */
+ private boolean _has_colourByLabel;
+
+ /**
+ * Field _autoScale.
+ */
+ private boolean _autoScale;
+
+ /**
+ * keeps track of state for field: _autoScale
+ */
+ private boolean _has_autoScale;
+
+ // ----------------/
+ // - Constructors -/
+ // ----------------/
+
+ public Colour()
+ {
+ super();
+ }
+
+ // -----------/
+ // - Methods -/
+ // -----------/
+
+ /**
+ */
+ public void deleteAutoScale()
+ {
+ this._has_autoScale = false;
+ }
+
+ /**
+ */
+ public void deleteColourByLabel()
+ {
+ this._has_colourByLabel = false;
+ }
+
+ /**
+ */
+ public void deleteMax()
+ {
+ this._has_max = false;
+ }
+
+ /**
+ */
+ public void deleteMin()
+ {
+ this._has_min = false;
+ }
+
+ /**
+ */
+ public void deleteThreshold()
+ {
+ this._has_threshold = false;
+ }
+
+ /**
+ * Returns the value of field 'autoScale'.
+ *
+ * @return the value of field 'AutoScale'.
+ */
+ public boolean getAutoScale()
+ {
+ return this._autoScale;
+ }
+
+ /**
+ * Returns the value of field 'colourByLabel'.
+ *
+ * @return the value of field 'ColourByLabel'.
+ */
+ public boolean getColourByLabel()
+ {
+ return this._colourByLabel;
+ }
+
+ /**
+ * Returns the value of field 'max'.
+ *
+ * @return the value of field 'Max'.
+ */
+ public float getMax()
+ {
+ return this._max;
+ }
+
+ /**
+ * Returns the value of field 'min'.
+ *
+ * @return the value of field 'Min'.
+ */
+ public float getMin()
+ {
+ return this._min;
+ }
+
+ /**
+ * Returns the value of field 'minRGB'.
+ *
+ * @return the value of field 'MinRGB'.
+ */
+ public java.lang.String getMinRGB()
+ {
+ return this._minRGB;
+ }
+
+ /**
+ * Returns the value of field 'name'.
+ *
+ * @return the value of field 'Name'.
+ */
+ public java.lang.String getName()
+ {
+ return this._name;
+ }
+
+ /**
+ * Returns the value of field 'RGB'.
+ *
+ * @return the value of field 'RGB'.
+ */
+ public java.lang.String getRGB()
+ {
+ return this._RGB;
+ }
+
+ /**
+ * Returns the value of field 'threshType'. The field 'threshType' has the
+ * following description: loosely specified enumeration: NONE,ABOVE, or BELOW
+ *
+ * @return the value of field 'ThreshType'.
+ */
+ public java.lang.String getThreshType()
+ {
+ return this._threshType;
+ }
+
+ /**
+ * Returns the value of field 'threshold'.
+ *
+ * @return the value of field 'Threshold'.
+ */
+ public float getThreshold()
+ {
+ return this._threshold;
+ }
+
+ /**
+ * Method hasAutoScale.
+ *
+ * @return true if at least one AutoScale has been added
+ */
+ public boolean hasAutoScale()
+ {
+ return this._has_autoScale;
+ }
+
+ /**
+ * Method hasColourByLabel.
+ *
+ * @return true if at least one ColourByLabel has been added
+ */
+ public boolean hasColourByLabel()
+ {
+ return this._has_colourByLabel;
+ }
+
+ /**
+ * Method hasMax.
+ *
+ * @return true if at least one Max has been added
+ */
+ public boolean hasMax()
+ {
+ return this._has_max;
+ }
+
+ /**
+ * Method hasMin.
+ *
+ * @return true if at least one Min has been added
+ */
+ public boolean hasMin()
+ {
+ return this._has_min;
+ }
+
+ /**
+ * Method hasThreshold.
+ *
+ * @return true if at least one Threshold has been added
+ */
+ public boolean hasThreshold()
+ {
+ return this._has_threshold;
+ }
+
+ /**
+ * Returns the value of field 'autoScale'.
+ *
+ * @return the value of field 'AutoScale'.
+ */
+ public boolean isAutoScale()
+ {
+ return this._autoScale;
+ }
+
+ /**
+ * Returns the value of field 'colourByLabel'.
+ *
+ * @return the value of field 'ColourByLabel'.
+ */
+ public boolean isColourByLabel()
+ {
+ return this._colourByLabel;
+ }
+
+ /**
+ * Method isValid.
+ *
+ * @return true if this object is valid according to the schema
+ */
+ public boolean isValid()
+ {
+ try
+ {
+ validate();
+ } catch (org.exolab.castor.xml.ValidationException vex)
+ {
+ return false;
+ }
+ return true;
+ }
+
+ /**
+ *
+ *
+ * @param out
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void marshal(final java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, out);
+ }
+
+ /**
+ *
+ *
+ * @param handler
+ * @throws java.io.IOException
+ * if an IOException occurs during marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ */
+ public void marshal(final org.xml.sax.ContentHandler handler)
+ throws java.io.IOException,
+ org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, handler);
+ }
+
+ /**
+ * Sets the value of field 'autoScale'.
+ *
+ * @param autoScale
+ * the value of field 'autoScale'.
+ */
+ public void setAutoScale(final boolean autoScale)
+ {
+ this._autoScale = autoScale;
+ this._has_autoScale = true;
+ }
+
+ /**
+ * Sets the value of field 'colourByLabel'.
+ *
+ * @param colourByLabel
+ * the value of field 'colourByLabel'.
+ */
+ public void setColourByLabel(final boolean colourByLabel)
+ {
+ this._colourByLabel = colourByLabel;
+ this._has_colourByLabel = true;
+ }
+
+ /**
+ * Sets the value of field 'max'.
+ *
+ * @param max
+ * the value of field 'max'.
+ */
+ public void setMax(final float max)
+ {
+ this._max = max;
+ this._has_max = true;
+ }
+
+ /**
+ * Sets the value of field 'min'.
+ *
+ * @param min
+ * the value of field 'min'.
+ */
+ public void setMin(final float min)
+ {
+ this._min = min;
+ this._has_min = true;
+ }
+
+ /**
+ * Sets the value of field 'minRGB'.
+ *
+ * @param minRGB
+ * the value of field 'minRGB'.
+ */
+ public void setMinRGB(final java.lang.String minRGB)
+ {
+ this._minRGB = minRGB;
+ }
+
+ /**
+ * Sets the value of field 'name'.
+ *
+ * @param name
+ * the value of field 'name'.
+ */
+ public void setName(final java.lang.String name)
+ {
+ this._name = name;
+ }
+
+ /**
+ * Sets the value of field 'RGB'.
+ *
+ * @param RGB
+ * the value of field 'RGB'.
+ */
+ public void setRGB(final java.lang.String RGB)
+ {
+ this._RGB = RGB;
+ }
+
+ /**
+ * Sets the value of field 'threshType'. The field 'threshType' has the
+ * following description: loosely specified enumeration: NONE,ABOVE, or BELOW
+ *
+ * @param threshType
+ * the value of field 'threshType'.
+ */
+ public void setThreshType(final java.lang.String threshType)
+ {
+ this._threshType = threshType;
+ }
+
+ /**
+ * Sets the value of field 'threshold'.
+ *
+ * @param threshold
+ * the value of field 'threshold'.
+ */
+ public void setThreshold(final float threshold)
+ {
+ this._threshold = threshold;
+ this._has_threshold = true;
+ }
+
+ /**
+ * Method unmarshal.
+ *
+ * @param reader
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @return the unmarshaled jalview.schemabinding.version2.Colour
+ */
+ public static jalview.schemabinding.version2.Colour unmarshal(
+ final java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ return (jalview.schemabinding.version2.Colour) Unmarshaller.unmarshal(
+ jalview.schemabinding.version2.Colour.class, reader);
+ }
+
+ /**
+ *
+ *
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void validate() throws org.exolab.castor.xml.ValidationException
+ {
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+ validator.validate(this);
+ }
+
+}
git://source.jalview.org / jalview.git / blobdiff