--- /dev/null
+/*
+ * This class was automatically generated with
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.schemabinding.version2;
+
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * Class DoubleMatrix.
+ *
+ * @version $Revision$ $Date$
+ */
+public class DoubleMatrix implements java.io.Serializable
+{
+
+ // --------------------------/
+ // - Class/Member Variables -/
+ // --------------------------/
+
+ /**
+ * Field _rows.
+ */
+ private int _rows;
+
+ /**
+ * keeps track of state for field: _rows
+ */
+ private boolean _has_rows;
+
+ /**
+ * Field _columns.
+ */
+ private int _columns;
+
+ /**
+ * keeps track of state for field: _columns
+ */
+ private boolean _has_columns;
+
+ /**
+ * Field _rowList.
+ */
+ private java.util.Vector _rowList;
+
+ /**
+ * Field _d.
+ */
+ private jalview.schemabinding.version2.D _d;
+
+ /**
+ * Field _e.
+ */
+ private jalview.schemabinding.version2.E _e;
+
+ // ----------------/
+ // - Constructors -/
+ // ----------------/
+
+ public DoubleMatrix()
+ {
+ super();
+ this._rowList = new java.util.Vector();
+ }
+
+ // -----------/
+ // - Methods -/
+ // -----------/
+
+ /**
+ *
+ *
+ * @param vRow
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void addRow(final jalview.schemabinding.version2.Row vRow)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ this._rowList.addElement(vRow);
+ }
+
+ /**
+ *
+ *
+ * @param index
+ * @param vRow
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void addRow(final int index,
+ final jalview.schemabinding.version2.Row vRow)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ this._rowList.add(index, vRow);
+ }
+
+ /**
+ */
+ public void deleteColumns()
+ {
+ this._has_columns = false;
+ }
+
+ /**
+ */
+ public void deleteRows()
+ {
+ this._has_rows = false;
+ }
+
+ /**
+ * Method enumerateRow.
+ *
+ * @return an Enumeration over all jalview.schemabinding.version2.Row elements
+ */
+ public java.util.Enumeration enumerateRow()
+ {
+ return this._rowList.elements();
+ }
+
+ /**
+ * Returns the value of field 'columns'.
+ *
+ * @return the value of field 'Columns'.
+ */
+ public int getColumns()
+ {
+ return this._columns;
+ }
+
+ /**
+ * Returns the value of field 'd'.
+ *
+ * @return the value of field 'D'.
+ */
+ public jalview.schemabinding.version2.D getD()
+ {
+ return this._d;
+ }
+
+ /**
+ * Returns the value of field 'e'.
+ *
+ * @return the value of field 'E'.
+ */
+ public jalview.schemabinding.version2.E getE()
+ {
+ return this._e;
+ }
+
+ /**
+ * Method getRow.
+ *
+ * @param index
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ * @return the value of the jalview.schemabinding.version2.Row at the given
+ * index
+ */
+ public jalview.schemabinding.version2.Row getRow(final int index)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ // check bounds for index
+ if (index < 0 || index >= this._rowList.size())
+ {
+ throw new IndexOutOfBoundsException("getRow: Index value '" + index
+ + "' not in range [0.." + (this._rowList.size() - 1) + "]");
+ }
+
+ return (jalview.schemabinding.version2.Row) _rowList.get(index);
+ }
+
+ /**
+ * Method getRow.Returns the contents of the collection in an Array.
+ * <p>
+ * Note: Just in case the collection contents are changing in another thread,
+ * we pass a 0-length Array of the correct type into the API call. This way we
+ * <i>know</i> that the Array returned is of exactly the correct length.
+ *
+ * @return this collection as an Array
+ */
+ public jalview.schemabinding.version2.Row[] getRow()
+ {
+ jalview.schemabinding.version2.Row[] array = new jalview.schemabinding.version2.Row[0];
+ return (jalview.schemabinding.version2.Row[]) this._rowList
+ .toArray(array);
+ }
+
+ /**
+ * Method getRowCount.
+ *
+ * @return the size of this collection
+ */
+ public int getRowCount()
+ {
+ return this._rowList.size();
+ }
+
+ /**
+ * Returns the value of field 'rows'.
+ *
+ * @return the value of field 'Rows'.
+ */
+ public int getRows()
+ {
+ return this._rows;
+ }
+
+ /**
+ * Method hasColumns.
+ *
+ * @return true if at least one Columns has been added
+ */
+ public boolean hasColumns()
+ {
+ return this._has_columns;
+ }
+
+ /**
+ * Method hasRows.
+ *
+ * @return true if at least one Rows has been added
+ */
+ public boolean hasRows()
+ {
+ return this._has_rows;
+ }
+
+ /**
+ * Method isValid.
+ *
+ * @return true if this object is valid according to the schema
+ */
+ public boolean isValid()
+ {
+ try
+ {
+ validate();
+ } catch (org.exolab.castor.xml.ValidationException vex)
+ {
+ return false;
+ }
+ return true;
+ }
+
+ /**
+ *
+ *
+ * @param out
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void marshal(final java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, out);
+ }
+
+ /**
+ *
+ *
+ * @param handler
+ * @throws java.io.IOException
+ * if an IOException occurs during marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ */
+ public void marshal(final org.xml.sax.ContentHandler handler)
+ throws java.io.IOException,
+ org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, handler);
+ }
+
+ /**
+ */
+ public void removeAllRow()
+ {
+ this._rowList.clear();
+ }
+
+ /**
+ * Method removeRow.
+ *
+ * @param vRow
+ * @return true if the object was removed from the collection.
+ */
+ public boolean removeRow(final jalview.schemabinding.version2.Row vRow)
+ {
+ boolean removed = _rowList.remove(vRow);
+ return removed;
+ }
+
+ /**
+ * Method removeRowAt.
+ *
+ * @param index
+ * @return the element removed from the collection
+ */
+ public jalview.schemabinding.version2.Row removeRowAt(final int index)
+ {
+ java.lang.Object obj = this._rowList.remove(index);
+ return (jalview.schemabinding.version2.Row) obj;
+ }
+
+ /**
+ * Sets the value of field 'columns'.
+ *
+ * @param columns
+ * the value of field 'columns'.
+ */
+ public void setColumns(final int columns)
+ {
+ this._columns = columns;
+ this._has_columns = true;
+ }
+
+ /**
+ * Sets the value of field 'd'.
+ *
+ * @param d
+ * the value of field 'd'.
+ */
+ public void setD(final jalview.schemabinding.version2.D d)
+ {
+ this._d = d;
+ }
+
+ /**
+ * Sets the value of field 'e'.
+ *
+ * @param e
+ * the value of field 'e'.
+ */
+ public void setE(final jalview.schemabinding.version2.E e)
+ {
+ this._e = e;
+ }
+
+ /**
+ *
+ *
+ * @param index
+ * @param vRow
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void setRow(final int index,
+ final jalview.schemabinding.version2.Row vRow)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ // check bounds for index
+ if (index < 0 || index >= this._rowList.size())
+ {
+ throw new IndexOutOfBoundsException("setRow: Index value '" + index
+ + "' not in range [0.." + (this._rowList.size() - 1) + "]");
+ }
+
+ this._rowList.set(index, vRow);
+ }
+
+ /**
+ *
+ *
+ * @param vRowArray
+ */
+ public void setRow(final jalview.schemabinding.version2.Row[] vRowArray)
+ {
+ // -- copy array
+ _rowList.clear();
+
+ for (int i = 0; i < vRowArray.length; i++)
+ {
+ this._rowList.add(vRowArray[i]);
+ }
+ }
+
+ /**
+ * Sets the value of field 'rows'.
+ *
+ * @param rows
+ * the value of field 'rows'.
+ */
+ public void setRows(final int rows)
+ {
+ this._rows = rows;
+ this._has_rows = true;
+ }
+
+ /**
+ * Method unmarshal.
+ *
+ * @param reader
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @return the unmarshaled jalview.schemabinding.version2.DoubleMatrix
+ */
+ public static jalview.schemabinding.version2.DoubleMatrix unmarshal(
+ final java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ return (jalview.schemabinding.version2.DoubleMatrix) Unmarshaller
+ .unmarshal(jalview.schemabinding.version2.DoubleMatrix.class,
+ reader);
+ }
+
+ /**
+ *
+ *
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void validate() throws org.exolab.castor.xml.ValidationException
+ {
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+ validator.validate(this);
+ }
+
+}
git://source.jalview.org / jalview.git / blobdiff