/*\r
- * This class was automatically generated with \r
+ * This class was automatically generated with\r
* <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
* Schema.\r
* $Id$\r
\r
package jalview.schemabinding.version2;\r
\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
//---------------------------------/\r
+//- Imported classes and packages -/\r
+//---------------------------------/\r
+\r
+import java.util.*;\r
\r
-import java.io.IOException;\r
-import java.io.Reader;\r
-import java.io.Serializable;\r
-import java.io.Writer;\r
-import org.exolab.castor.xml.MarshalException;\r
-import org.exolab.castor.xml.Marshaller;\r
-import org.exolab.castor.xml.Unmarshaller;\r
-import org.exolab.castor.xml.ValidationException;\r
-import org.xml.sax.ContentHandler;\r
+import org.exolab.castor.xml.*;\r
\r
/**\r
* Class Feature.\r
- * \r
+ *\r
* @version $Revision$ $Date$\r
*/\r
-public class Feature implements java.io.Serializable {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field _begin\r
- */\r
- private int _begin;\r
-\r
- /**\r
- * keeps track of state for field: _begin\r
- */\r
- private boolean _has_begin;\r
-\r
- /**\r
- * Field _end\r
- */\r
- private int _end;\r
-\r
- /**\r
- * keeps track of state for field: _end\r
- */\r
- private boolean _has_end;\r
-\r
- /**\r
- * Field _type\r
- */\r
- private java.lang.String _type;\r
-\r
- /**\r
- * Field _description\r
- */\r
- private java.lang.String _description;\r
-\r
- /**\r
- * Field _status\r
- */\r
- private java.lang.String _status;\r
-\r
- /**\r
- * Field _featureGroup\r
- */\r
- private java.lang.String _featureGroup;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public Feature() {\r
- super();\r
- } //-- jalview.schemabinding.version2.Feature()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method deleteBegin\r
- * \r
- */\r
- public void deleteBegin()\r
- {\r
- this._has_begin= false;\r
- } //-- void deleteBegin() \r
-\r
- /**\r
- * Method deleteEnd\r
- * \r
- */\r
- public void deleteEnd()\r
- {\r
- this._has_end= false;\r
- } //-- void deleteEnd() \r
-\r
- /**\r
- * Returns the value of field 'begin'.\r
- * \r
- * @return int\r
- * @return the value of field 'begin'.\r
- */\r
- public int getBegin()\r
- {\r
- return this._begin;\r
- } //-- int getBegin() \r
-\r
- /**\r
- * Returns the value of field 'description'.\r
- * \r
- * @return String\r
- * @return the value of field 'description'.\r
- */\r
- public java.lang.String getDescription()\r
- {\r
- return this._description;\r
- } //-- java.lang.String getDescription() \r
-\r
- /**\r
- * Returns the value of field 'end'.\r
- * \r
- * @return int\r
- * @return the value of field 'end'.\r
- */\r
- public int getEnd()\r
- {\r
- return this._end;\r
- } //-- int getEnd() \r
-\r
- /**\r
- * Returns the value of field 'featureGroup'.\r
- * \r
- * @return String\r
- * @return the value of field 'featureGroup'.\r
- */\r
- public java.lang.String getFeatureGroup()\r
- {\r
- return this._featureGroup;\r
- } //-- java.lang.String getFeatureGroup() \r
-\r
- /**\r
- * Returns the value of field 'status'.\r
- * \r
- * @return String\r
- * @return the value of field 'status'.\r
- */\r
- public java.lang.String getStatus()\r
- {\r
- return this._status;\r
- } //-- java.lang.String getStatus() \r
-\r
- /**\r
- * Returns the value of field 'type'.\r
- * \r
- * @return String\r
- * @return the value of field 'type'.\r
- */\r
- public java.lang.String getType()\r
- {\r
- return this._type;\r
- } //-- java.lang.String getType() \r
-\r
- /**\r
- * Method hasBegin\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasBegin()\r
- {\r
- return this._has_begin;\r
- } //-- boolean hasBegin() \r
-\r
- /**\r
- * Method hasEnd\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasEnd()\r
- {\r
- return this._has_end;\r
- } //-- boolean hasEnd() \r
-\r
- /**\r
- * Method isValid\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean isValid()\r
- {\r
- try {\r
- validate();\r
- }\r
- catch (org.exolab.castor.xml.ValidationException vex) {\r
- return false;\r
- }\r
- return true;\r
- } //-- boolean isValid() \r
-\r
- /**\r
- * Method marshal\r
- * \r
- * \r
- * \r
- * @param out\r
- */\r
- public void marshal(java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
- {\r
- \r
- Marshaller.marshal(this, out);\r
- } //-- void marshal(java.io.Writer) \r
-\r
- /**\r
- * Method marshal\r
- * \r
- * \r
- * \r
- * @param handler\r
- */\r
- public void marshal(org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
- {\r
- \r
- Marshaller.marshal(this, handler);\r
- } //-- void marshal(org.xml.sax.ContentHandler) \r
-\r
- /**\r
- * Sets the value of field 'begin'.\r
- * \r
- * @param begin the value of field 'begin'.\r
- */\r
- public void setBegin(int begin)\r
- {\r
- this._begin = begin;\r
- this._has_begin = true;\r
- } //-- void setBegin(int) \r
-\r
- /**\r
- * Sets the value of field 'description'.\r
- * \r
- * @param description the value of field 'description'.\r
- */\r
- public void setDescription(java.lang.String description)\r
- {\r
- this._description = description;\r
- } //-- void setDescription(java.lang.String) \r
-\r
- /**\r
- * Sets the value of field 'end'.\r
- * \r
- * @param end the value of field 'end'.\r
- */\r
- public void setEnd(int end)\r
+public class Feature\r
+ implements java.io.Serializable\r
+{\r
+\r
+ //--------------------------/\r
+ //- Class/Member Variables -/\r
+ //--------------------------/\r
+\r
+ /**\r
+ * Field _begin\r
+ */\r
+ private int _begin;\r
+\r
+ /**\r
+ * keeps track of state for field: _begin\r
+ */\r
+ private boolean _has_begin;\r
+\r
+ /**\r
+ * Field _end\r
+ */\r
+ private int _end;\r
+\r
+ /**\r
+ * keeps track of state for field: _end\r
+ */\r
+ private boolean _has_end;\r
+\r
+ /**\r
+ * Field _type\r
+ */\r
+ private java.lang.String _type;\r
+\r
+ /**\r
+ * Field _description\r
+ */\r
+ private java.lang.String _description;\r
+\r
+ /**\r
+ * Field _status\r
+ */\r
+ private java.lang.String _status;\r
+\r
+ /**\r
+ * Field _featureGroup\r
+ */\r
+ private java.lang.String _featureGroup;\r
+\r
+ /**\r
+ * Field _score\r
+ */\r
+ private float _score;\r
+\r
+ /**\r
+ * keeps track of state for field: _score\r
+ */\r
+ private boolean _has_score;\r
+\r
+ /**\r
+ * Field _otherDataList\r
+ */\r
+ private java.util.Vector _otherDataList;\r
+\r
+ //----------------/\r
+ //- Constructors -/\r
+ //----------------/\r
+\r
+ public Feature()\r
+ {\r
+ super();\r
+ _otherDataList = new Vector();\r
+ } //-- jalview.schemabinding.version2.Feature()\r
+\r
+ //-----------/\r
+ //- Methods -/\r
+ //-----------/\r
+\r
+ /**\r
+ * Method addOtherData\r
+ *\r
+ *\r
+ *\r
+ * @param vOtherData\r
+ */\r
+ public void addOtherData(jalview.schemabinding.version2.OtherData vOtherData)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ _otherDataList.addElement(vOtherData);\r
+ } //-- void addOtherData(jalview.schemabinding.version2.OtherData)\r
+\r
+ /**\r
+ * Method addOtherData\r
+ *\r
+ *\r
+ *\r
+ * @param index\r
+ * @param vOtherData\r
+ */\r
+ public void addOtherData(int index,\r
+ jalview.schemabinding.version2.OtherData vOtherData)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ _otherDataList.insertElementAt(vOtherData, index);\r
+ } //-- void addOtherData(int, jalview.schemabinding.version2.OtherData)\r
+\r
+ /**\r
+ * Method deleteBegin\r
+ *\r
+ */\r
+ public void deleteBegin()\r
+ {\r
+ this._has_begin = false;\r
+ } //-- void deleteBegin()\r
+\r
+ /**\r
+ * Method deleteEnd\r
+ *\r
+ */\r
+ public void deleteEnd()\r
+ {\r
+ this._has_end = false;\r
+ } //-- void deleteEnd()\r
+\r
+ /**\r
+ * Method deleteScore\r
+ *\r
+ */\r
+ public void deleteScore()\r
+ {\r
+ this._has_score = false;\r
+ } //-- void deleteScore()\r
+\r
+ /**\r
+ * Method enumerateOtherData\r
+ *\r
+ *\r
+ *\r
+ * @return Enumeration\r
+ */\r
+ public java.util.Enumeration enumerateOtherData()\r
+ {\r
+ return _otherDataList.elements();\r
+ } //-- java.util.Enumeration enumerateOtherData()\r
+\r
+ /**\r
+ * Returns the value of field 'begin'.\r
+ *\r
+ * @return int\r
+ * @return the value of field 'begin'.\r
+ */\r
+ public int getBegin()\r
+ {\r
+ return this._begin;\r
+ } //-- int getBegin()\r
+\r
+ /**\r
+ * Returns the value of field 'description'.\r
+ *\r
+ * @return String\r
+ * @return the value of field 'description'.\r
+ */\r
+ public java.lang.String getDescription()\r
+ {\r
+ return this._description;\r
+ } //-- java.lang.String getDescription()\r
+\r
+ /**\r
+ * Returns the value of field 'end'.\r
+ *\r
+ * @return int\r
+ * @return the value of field 'end'.\r
+ */\r
+ public int getEnd()\r
+ {\r
+ return this._end;\r
+ } //-- int getEnd()\r
+\r
+ /**\r
+ * Returns the value of field 'featureGroup'.\r
+ *\r
+ * @return String\r
+ * @return the value of field 'featureGroup'.\r
+ */\r
+ public java.lang.String getFeatureGroup()\r
+ {\r
+ return this._featureGroup;\r
+ } //-- java.lang.String getFeatureGroup()\r
+\r
+ /**\r
+ * Method getOtherData\r
+ *\r
+ *\r
+ *\r
+ * @param index\r
+ * @return OtherData\r
+ */\r
+ public jalview.schemabinding.version2.OtherData getOtherData(int index)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ //-- check bounds for index\r
+ if ( (index < 0) || (index > _otherDataList.size()))\r
{\r
- this._end = end;\r
- this._has_end = true;\r
- } //-- void setEnd(int) \r
-\r
- /**\r
- * Sets the value of field 'featureGroup'.\r
- * \r
- * @param featureGroup the value of field 'featureGroup'.\r
- */\r
- public void setFeatureGroup(java.lang.String featureGroup)\r
+ throw new IndexOutOfBoundsException();\r
+ }\r
+\r
+ return (jalview.schemabinding.version2.OtherData) _otherDataList.elementAt(\r
+ index);\r
+ } //-- jalview.schemabinding.version2.OtherData getOtherData(int)\r
+\r
+ /**\r
+ * Method getOtherData\r
+ *\r
+ *\r
+ *\r
+ * @return OtherData\r
+ */\r
+ public jalview.schemabinding.version2.OtherData[] getOtherData()\r
+ {\r
+ int size = _otherDataList.size();\r
+ jalview.schemabinding.version2.OtherData[] mArray = new jalview.\r
+ schemabinding.version2.OtherData[size];\r
+ for (int index = 0; index < size; index++)\r
{\r
- this._featureGroup = featureGroup;\r
- } //-- void setFeatureGroup(java.lang.String) \r
-\r
- /**\r
- * Sets the value of field 'status'.\r
- * \r
- * @param status the value of field 'status'.\r
- */\r
- public void setStatus(java.lang.String status)\r
+ mArray[index] = (jalview.schemabinding.version2.OtherData) _otherDataList.\r
+ elementAt(index);\r
+ }\r
+ return mArray;\r
+ } //-- jalview.schemabinding.version2.OtherData[] getOtherData()\r
+\r
+ /**\r
+ * Method getOtherDataCount\r
+ *\r
+ *\r
+ *\r
+ * @return int\r
+ */\r
+ public int getOtherDataCount()\r
+ {\r
+ return _otherDataList.size();\r
+ } //-- int getOtherDataCount()\r
+\r
+ /**\r
+ * Returns the value of field 'score'.\r
+ *\r
+ * @return float\r
+ * @return the value of field 'score'.\r
+ */\r
+ public float getScore()\r
+ {\r
+ return this._score;\r
+ } //-- float getScore()\r
+\r
+ /**\r
+ * Returns the value of field 'status'.\r
+ *\r
+ * @return String\r
+ * @return the value of field 'status'.\r
+ */\r
+ public java.lang.String getStatus()\r
+ {\r
+ return this._status;\r
+ } //-- java.lang.String getStatus()\r
+\r
+ /**\r
+ * Returns the value of field 'type'.\r
+ *\r
+ * @return String\r
+ * @return the value of field 'type'.\r
+ */\r
+ public java.lang.String getType()\r
+ {\r
+ return this._type;\r
+ } //-- java.lang.String getType()\r
+\r
+ /**\r
+ * Method hasBegin\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean hasBegin()\r
+ {\r
+ return this._has_begin;\r
+ } //-- boolean hasBegin()\r
+\r
+ /**\r
+ * Method hasEnd\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean hasEnd()\r
+ {\r
+ return this._has_end;\r
+ } //-- boolean hasEnd()\r
+\r
+ /**\r
+ * Method hasScore\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean hasScore()\r
+ {\r
+ return this._has_score;\r
+ } //-- boolean hasScore()\r
+\r
+ /**\r
+ * Method isValid\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean isValid()\r
+ {\r
+ try\r
{\r
- this._status = status;\r
- } //-- void setStatus(java.lang.String) \r
-\r
- /**\r
- * Sets the value of field 'type'.\r
- * \r
- * @param type the value of field 'type'.\r
- */\r
- public void setType(java.lang.String type)\r
+ validate();\r
+ }\r
+ catch (org.exolab.castor.xml.ValidationException vex)\r
{\r
- this._type = type;\r
- } //-- void setType(java.lang.String) \r
-\r
- /**\r
- * Method unmarshal\r
- * \r
- * \r
- * \r
- * @param reader\r
- * @return Object\r
- */\r
- public static java.lang.Object unmarshal(java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ return false;\r
+ }\r
+ return true;\r
+ } //-- boolean isValid()\r
+\r
+ /**\r
+ * Method marshal\r
+ *\r
+ *\r
+ *\r
+ * @param out\r
+ */\r
+ public void marshal(java.io.Writer out)\r
+ throws org.exolab.castor.xml.MarshalException,\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
+\r
+ Marshaller.marshal(this, out);\r
+ } //-- void marshal(java.io.Writer)\r
+\r
+ /**\r
+ * Method marshal\r
+ *\r
+ *\r
+ *\r
+ * @param handler\r
+ */\r
+ public void marshal(org.xml.sax.ContentHandler handler)\r
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException,\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
+\r
+ Marshaller.marshal(this, handler);\r
+ } //-- void marshal(org.xml.sax.ContentHandler)\r
+\r
+ /**\r
+ * Method removeAllOtherData\r
+ *\r
+ */\r
+ public void removeAllOtherData()\r
+ {\r
+ _otherDataList.removeAllElements();\r
+ } //-- void removeAllOtherData()\r
+\r
+ /**\r
+ * Method removeOtherData\r
+ *\r
+ *\r
+ *\r
+ * @param index\r
+ * @return OtherData\r
+ */\r
+ public jalview.schemabinding.version2.OtherData removeOtherData(int index)\r
+ {\r
+ java.lang.Object obj = _otherDataList.elementAt(index);\r
+ _otherDataList.removeElementAt(index);\r
+ return (jalview.schemabinding.version2.OtherData) obj;\r
+ } //-- jalview.schemabinding.version2.OtherData removeOtherData(int)\r
+\r
+ /**\r
+ * Sets the value of field 'begin'.\r
+ *\r
+ * @param begin the value of field 'begin'.\r
+ */\r
+ public void setBegin(int begin)\r
+ {\r
+ this._begin = begin;\r
+ this._has_begin = true;\r
+ } //-- void setBegin(int)\r
+\r
+ /**\r
+ * Sets the value of field 'description'.\r
+ *\r
+ * @param description the value of field 'description'.\r
+ */\r
+ public void setDescription(java.lang.String description)\r
+ {\r
+ this._description = description;\r
+ } //-- void setDescription(java.lang.String)\r
+\r
+ /**\r
+ * Sets the value of field 'end'.\r
+ *\r
+ * @param end the value of field 'end'.\r
+ */\r
+ public void setEnd(int end)\r
+ {\r
+ this._end = end;\r
+ this._has_end = true;\r
+ } //-- void setEnd(int)\r
+\r
+ /**\r
+ * Sets the value of field 'featureGroup'.\r
+ *\r
+ * @param featureGroup the value of field 'featureGroup'.\r
+ */\r
+ public void setFeatureGroup(java.lang.String featureGroup)\r
+ {\r
+ this._featureGroup = featureGroup;\r
+ } //-- void setFeatureGroup(java.lang.String)\r
+\r
+ /**\r
+ * Method setOtherData\r
+ *\r
+ *\r
+ *\r
+ * @param index\r
+ * @param vOtherData\r
+ */\r
+ public void setOtherData(int index,\r
+ jalview.schemabinding.version2.OtherData vOtherData)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ //-- check bounds for index\r
+ if ( (index < 0) || (index > _otherDataList.size()))\r
{\r
- return (jalview.schemabinding.version2.Feature) Unmarshaller.unmarshal(jalview.schemabinding.version2.Feature.class, reader);\r
- } //-- java.lang.Object unmarshal(java.io.Reader) \r
-\r
- /**\r
- * Method validate\r
- * \r
- */\r
- public void validate()\r
- throws org.exolab.castor.xml.ValidationException\r
+ throw new IndexOutOfBoundsException();\r
+ }\r
+ _otherDataList.setElementAt(vOtherData, index);\r
+ } //-- void setOtherData(int, jalview.schemabinding.version2.OtherData)\r
+\r
+ /**\r
+ * Method setOtherData\r
+ *\r
+ *\r
+ *\r
+ * @param otherDataArray\r
+ */\r
+ public void setOtherData(jalview.schemabinding.version2.OtherData[]\r
+ otherDataArray)\r
+ {\r
+ //-- copy array\r
+ _otherDataList.removeAllElements();\r
+ for (int i = 0; i < otherDataArray.length; i++)\r
{\r
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
- validator.validate(this);\r
- } //-- void validate() \r
+ _otherDataList.addElement(otherDataArray[i]);\r
+ }\r
+ } //-- void setOtherData(jalview.schemabinding.version2.OtherData)\r
+\r
+ /**\r
+ * Sets the value of field 'score'.\r
+ *\r
+ * @param score the value of field 'score'.\r
+ */\r
+ public void setScore(float score)\r
+ {\r
+ this._score = score;\r
+ this._has_score = true;\r
+ } //-- void setScore(float)\r
+\r
+ /**\r
+ * Sets the value of field 'status'.\r
+ *\r
+ * @param status the value of field 'status'.\r
+ */\r
+ public void setStatus(java.lang.String status)\r
+ {\r
+ this._status = status;\r
+ } //-- void setStatus(java.lang.String)\r
+\r
+ /**\r
+ * Sets the value of field 'type'.\r
+ *\r
+ * @param type the value of field 'type'.\r
+ */\r
+ public void setType(java.lang.String type)\r
+ {\r
+ this._type = type;\r
+ } //-- void setType(java.lang.String)\r
+\r
+ /**\r
+ * Method unmarshal\r
+ *\r
+ *\r
+ *\r
+ * @param reader\r
+ * @return Object\r
+ */\r
+ public static java.lang.Object unmarshal(java.io.Reader reader)\r
+ throws org.exolab.castor.xml.MarshalException,\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
+ return (jalview.schemabinding.version2.Feature) Unmarshaller.unmarshal(\r
+ jalview.schemabinding.version2.Feature.class, reader);\r
+ } //-- java.lang.Object unmarshal(java.io.Reader)\r
+\r
+ /**\r
+ * Method validate\r
+ *\r
+ */\r
+ public void validate()\r
+ throws org.exolab.castor.xml.ValidationException\r
+ {\r
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.\r
+ Validator();\r
+ validator.validate(this);\r
+ } //-- void validate()\r
\r
}\r
git://source.jalview.org / jalview.git / blobdiff