-/*\r
- * This class was automatically generated with\r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
-//---------------------------------/\r
-//- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import java.util.*;\r
-\r
-import org.exolab.castor.xml.*;\r
-\r
-/**\r
- * Class JalviewUserColours.\r
- *\r
- * @version $Revision$ $Date$\r
- */\r
-public class JalviewUserColours\r
- implements java.io.Serializable\r
-{\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field _schemeName\r
- */\r
- private java.lang.String _schemeName;\r
-\r
- /**\r
- * Field _colourList\r
- */\r
- private java.util.Vector _colourList;\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public JalviewUserColours()\r
- {\r
- super();\r
- _colourList = new Vector();\r
- } //-- jalview.schemabinding.version2.JalviewUserColours()\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method addColour\r
- *\r
- *\r
- *\r
- * @param vColour\r
- */\r
- public void addColour(jalview.schemabinding.version2.Colour vColour)\r
- throws java.lang.IndexOutOfBoundsException\r
- {\r
- _colourList.addElement(vColour);\r
- } //-- void addColour(jalview.schemabinding.version2.Colour)\r
-\r
- /**\r
- * Method addColour\r
- *\r
- *\r
- *\r
- * @param index\r
- * @param vColour\r
- */\r
- public void addColour(int index,\r
- jalview.schemabinding.version2.Colour vColour)\r
- throws java.lang.IndexOutOfBoundsException\r
- {\r
- _colourList.insertElementAt(vColour, index);\r
- } //-- void addColour(int, jalview.schemabinding.version2.Colour)\r
-\r
- /**\r
- * Method enumerateColour\r
- *\r
- *\r
- *\r
- * @return Enumeration\r
- */\r
- public java.util.Enumeration enumerateColour()\r
- {\r
- return _colourList.elements();\r
- } //-- java.util.Enumeration enumerateColour()\r
-\r
- /**\r
- * Method getColour\r
- *\r
- *\r
- *\r
- * @param index\r
- * @return Colour\r
- */\r
- public jalview.schemabinding.version2.Colour getColour(int index)\r
- throws java.lang.IndexOutOfBoundsException\r
- {\r
- //-- check bounds for index\r
- if ( (index < 0) || (index > _colourList.size()))\r
- {\r
- throw new IndexOutOfBoundsException();\r
- }\r
-\r
- return (jalview.schemabinding.version2.Colour) _colourList.elementAt(index);\r
- } //-- jalview.schemabinding.version2.Colour getColour(int)\r
-\r
- /**\r
- * Method getColour\r
- *\r
- *\r
- *\r
- * @return Colour\r
- */\r
- public jalview.schemabinding.version2.Colour[] getColour()\r
- {\r
- int size = _colourList.size();\r
- jalview.schemabinding.version2.Colour[] mArray = new jalview.schemabinding.\r
- version2.Colour[size];\r
- for (int index = 0; index < size; index++)\r
- {\r
- mArray[index] = (jalview.schemabinding.version2.Colour) _colourList.\r
- elementAt(index);\r
- }\r
- return mArray;\r
- } //-- jalview.schemabinding.version2.Colour[] getColour()\r
-\r
- /**\r
- * Method getColourCount\r
- *\r
- *\r
- *\r
- * @return int\r
- */\r
- public int getColourCount()\r
- {\r
- return _colourList.size();\r
- } //-- int getColourCount()\r
-\r
- /**\r
- * Returns the value of field 'schemeName'.\r
- *\r
- * @return String\r
- * @return the value of field 'schemeName'.\r
- */\r
- public java.lang.String getSchemeName()\r
- {\r
- return this._schemeName;\r
- } //-- java.lang.String getSchemeName()\r
-\r
- /**\r
- * Method isValid\r
- *\r
- *\r
- *\r
- * @return boolean\r
- */\r
- public boolean isValid()\r
- {\r
- try\r
- {\r
- validate();\r
- }\r
- catch (org.exolab.castor.xml.ValidationException vex)\r
- {\r
- return false;\r
- }\r
- return true;\r
- } //-- boolean isValid()\r
-\r
- /**\r
- * Method marshal\r
- *\r
- *\r
- *\r
- * @param out\r
- */\r
- public void marshal(java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
-\r
- Marshaller.marshal(this, out);\r
- } //-- void marshal(java.io.Writer)\r
-\r
- /**\r
- * Method marshal\r
- *\r
- *\r
- *\r
- * @param handler\r
- */\r
- public void marshal(org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException, org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
-\r
- Marshaller.marshal(this, handler);\r
- } //-- void marshal(org.xml.sax.ContentHandler)\r
-\r
- /**\r
- * Method removeAllColour\r
- *\r
- */\r
- public void removeAllColour()\r
- {\r
- _colourList.removeAllElements();\r
- } //-- void removeAllColour()\r
-\r
- /**\r
- * Method removeColour\r
- *\r
- *\r
- *\r
- * @param index\r
- * @return Colour\r
- */\r
- public jalview.schemabinding.version2.Colour removeColour(int index)\r
- {\r
- java.lang.Object obj = _colourList.elementAt(index);\r
- _colourList.removeElementAt(index);\r
- return (jalview.schemabinding.version2.Colour) obj;\r
- } //-- jalview.schemabinding.version2.Colour removeColour(int)\r
-\r
- /**\r
- * Method setColour\r
- *\r
- *\r
- *\r
- * @param index\r
- * @param vColour\r
- */\r
- public void setColour(int index,\r
- jalview.schemabinding.version2.Colour vColour)\r
- throws java.lang.IndexOutOfBoundsException\r
- {\r
- //-- check bounds for index\r
- if ( (index < 0) || (index > _colourList.size()))\r
- {\r
- throw new IndexOutOfBoundsException();\r
- }\r
- _colourList.setElementAt(vColour, index);\r
- } //-- void setColour(int, jalview.schemabinding.version2.Colour)\r
-\r
- /**\r
- * Method setColour\r
- *\r
- *\r
- *\r
- * @param colourArray\r
- */\r
- public void setColour(jalview.schemabinding.version2.Colour[] colourArray)\r
- {\r
- //-- copy array\r
- _colourList.removeAllElements();\r
- for (int i = 0; i < colourArray.length; i++)\r
- {\r
- _colourList.addElement(colourArray[i]);\r
- }\r
- } //-- void setColour(jalview.schemabinding.version2.Colour)\r
-\r
- /**\r
- * Sets the value of field 'schemeName'.\r
- *\r
- * @param schemeName the value of field 'schemeName'.\r
- */\r
- public void setSchemeName(java.lang.String schemeName)\r
- {\r
- this._schemeName = schemeName;\r
- } //-- void setSchemeName(java.lang.String)\r
-\r
- /**\r
- * Method unmarshal\r
- *\r
- *\r
- *\r
- * @param reader\r
- * @return Object\r
- */\r
- public static java.lang.Object unmarshal(java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
- return (jalview.schemabinding.version2.JalviewUserColours) Unmarshaller.\r
- unmarshal(jalview.schemabinding.version2.JalviewUserColours.class,\r
- reader);\r
- } //-- java.lang.Object unmarshal(java.io.Reader)\r
-\r
- /**\r
- * Method validate\r
- *\r
- */\r
- public void validate()\r
- throws org.exolab.castor.xml.ValidationException\r
- {\r
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.\r
- Validator();\r
- validator.validate(this);\r
- } //-- void validate()\r
-\r
-}\r
+/*
+ * This class was automatically generated with
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.schemabinding.version2;
+
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * Class JalviewUserColours.
+ *
+ * @version $Revision$ $Date$
+ */
+public class JalviewUserColours implements java.io.Serializable
+{
+
+ // --------------------------/
+ // - Class/Member Variables -/
+ // --------------------------/
+
+ /**
+ * Field _schemeName.
+ */
+ private java.lang.String _schemeName;
+
+ /**
+ * Jalview colour scheme document version.
+ *
+ */
+ private java.lang.String _version;
+
+ /**
+ * Field _colourList.
+ */
+ private java.util.Vector _colourList;
+
+ /**
+ * Field _filterList.
+ */
+ private java.util.Vector _filterList;
+
+ // ----------------/
+ // - Constructors -/
+ // ----------------/
+
+ public JalviewUserColours()
+ {
+ super();
+ this._colourList = new java.util.Vector();
+ this._filterList = new java.util.Vector();
+ }
+
+ // -----------/
+ // - Methods -/
+ // -----------/
+
+ /**
+ *
+ *
+ * @param vColour
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void addColour(final Colour vColour)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ this._colourList.addElement(vColour);
+ }
+
+ /**
+ *
+ *
+ * @param index
+ * @param vColour
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void addColour(final int index, final Colour vColour)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ this._colourList.add(index, vColour);
+ }
+
+ /**
+ *
+ *
+ * @param vFilter
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void addFilter(final Filter vFilter)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ this._filterList.addElement(vFilter);
+ }
+
+ /**
+ *
+ *
+ * @param index
+ * @param vFilter
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void addFilter(final int index, final Filter vFilter)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ this._filterList.add(index, vFilter);
+ }
+
+ /**
+ * Method enumerateColour.
+ *
+ * @return an Enumeration over all Colour elements
+ */
+ public java.util.Enumeration enumerateColour()
+ {
+ return this._colourList.elements();
+ }
+
+ /**
+ * Method enumerateFilter.
+ *
+ * @return an Enumeration over all Filter elements
+ */
+ public java.util.Enumeration enumerateFilter()
+ {
+ return this._filterList.elements();
+ }
+
+ /**
+ * Method getColour.
+ *
+ * @param index
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ * @return the value of the Colour at the given index
+ */
+ public Colour getColour(final int index)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ // check bounds for index
+ if (index < 0 || index >= this._colourList.size())
+ {
+ throw new IndexOutOfBoundsException(
+ "getColour: Index value '" + index + "' not in range [0.."
+ + (this._colourList.size() - 1) + "]");
+ }
+
+ return (Colour) _colourList.get(index);
+ }
+
+ /**
+ * Method getColour.Returns the contents of the collection in an Array.
+ * <p>
+ * Note: Just in case the collection contents are changing in another thread,
+ * we pass a 0-length Array of the correct type into the API call. This way we
+ * <i>know</i> that the Array returned is of exactly the correct length.
+ *
+ * @return this collection as an Array
+ */
+ public Colour[] getColour()
+ {
+ Colour[] array = new Colour[0];
+ return (Colour[]) this._colourList.toArray(array);
+ }
+
+ /**
+ * Method getColourCount.
+ *
+ * @return the size of this collection
+ */
+ public int getColourCount()
+ {
+ return this._colourList.size();
+ }
+
+ /**
+ * Method getFilter.
+ *
+ * @param index
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ * @return the value of the Filter at the given index
+ */
+ public Filter getFilter(final int index)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ // check bounds for index
+ if (index < 0 || index >= this._filterList.size())
+ {
+ throw new IndexOutOfBoundsException(
+ "getFilter: Index value '" + index + "' not in range [0.."
+ + (this._filterList.size() - 1) + "]");
+ }
+
+ return (Filter) _filterList.get(index);
+ }
+
+ /**
+ * Method getFilter.Returns the contents of the collection in an Array.
+ * <p>
+ * Note: Just in case the collection contents are changing in another thread,
+ * we pass a 0-length Array of the correct type into the API call. This way we
+ * <i>know</i> that the Array returned is of exactly the correct length.
+ *
+ * @return this collection as an Array
+ */
+ public Filter[] getFilter()
+ {
+ Filter[] array = new Filter[0];
+ return (Filter[]) this._filterList.toArray(array);
+ }
+
+ /**
+ * Method getFilterCount.
+ *
+ * @return the size of this collection
+ */
+ public int getFilterCount()
+ {
+ return this._filterList.size();
+ }
+
+ /**
+ * Returns the value of field 'schemeName'.
+ *
+ * @return the value of field 'SchemeName'.
+ */
+ public java.lang.String getSchemeName()
+ {
+ return this._schemeName;
+ }
+
+ /**
+ * Returns the value of field 'version'. The field 'version' has the following
+ * description: Jalview colour scheme document version.
+ *
+ *
+ * @return the value of field 'Version'.
+ */
+ public java.lang.String getVersion()
+ {
+ return this._version;
+ }
+
+ /**
+ * Method isValid.
+ *
+ * @return true if this object is valid according to the schema
+ */
+ public boolean isValid()
+ {
+ try
+ {
+ validate();
+ } catch (org.exolab.castor.xml.ValidationException vex)
+ {
+ return false;
+ }
+ return true;
+ }
+
+ /**
+ *
+ *
+ * @param out
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void marshal(final java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, out);
+ }
+
+ /**
+ *
+ *
+ * @param handler
+ * @throws java.io.IOException
+ * if an IOException occurs during marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ */
+ public void marshal(final org.xml.sax.ContentHandler handler)
+ throws java.io.IOException,
+ org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, handler);
+ }
+
+ /**
+ */
+ public void removeAllColour()
+ {
+ this._colourList.clear();
+ }
+
+ /**
+ */
+ public void removeAllFilter()
+ {
+ this._filterList.clear();
+ }
+
+ /**
+ * Method removeColour.
+ *
+ * @param vColour
+ * @return true if the object was removed from the collection.
+ */
+ public boolean removeColour(final Colour vColour)
+ {
+ boolean removed = _colourList.remove(vColour);
+ return removed;
+ }
+
+ /**
+ * Method removeColourAt.
+ *
+ * @param index
+ * @return the element removed from the collection
+ */
+ public Colour removeColourAt(final int index)
+ {
+ java.lang.Object obj = this._colourList.remove(index);
+ return (Colour) obj;
+ }
+
+ /**
+ * Method removeFilter.
+ *
+ * @param vFilter
+ * @return true if the object was removed from the collection.
+ */
+ public boolean removeFilter(final Filter vFilter)
+ {
+ boolean removed = _filterList.remove(vFilter);
+ return removed;
+ }
+
+ /**
+ * Method removeFilterAt.
+ *
+ * @param index
+ * @return the element removed from the collection
+ */
+ public Filter removeFilterAt(final int index)
+ {
+ java.lang.Object obj = this._filterList.remove(index);
+ return (Filter) obj;
+ }
+
+ /**
+ *
+ *
+ * @param index
+ * @param vColour
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void setColour(final int index, final Colour vColour)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ // check bounds for index
+ if (index < 0 || index >= this._colourList.size())
+ {
+ throw new IndexOutOfBoundsException(
+ "setColour: Index value '" + index + "' not in range [0.."
+ + (this._colourList.size() - 1) + "]");
+ }
+
+ this._colourList.set(index, vColour);
+ }
+
+ /**
+ *
+ *
+ * @param vColourArray
+ */
+ public void setColour(final Colour[] vColourArray)
+ {
+ // -- copy array
+ _colourList.clear();
+
+ for (int i = 0; i < vColourArray.length; i++)
+ {
+ this._colourList.add(vColourArray[i]);
+ }
+ }
+
+ /**
+ *
+ *
+ * @param index
+ * @param vFilter
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void setFilter(final int index, final Filter vFilter)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ // check bounds for index
+ if (index < 0 || index >= this._filterList.size())
+ {
+ throw new IndexOutOfBoundsException(
+ "setFilter: Index value '" + index + "' not in range [0.."
+ + (this._filterList.size() - 1) + "]");
+ }
+
+ this._filterList.set(index, vFilter);
+ }
+
+ /**
+ *
+ *
+ * @param vFilterArray
+ */
+ public void setFilter(final Filter[] vFilterArray)
+ {
+ // -- copy array
+ _filterList.clear();
+
+ for (int i = 0; i < vFilterArray.length; i++)
+ {
+ this._filterList.add(vFilterArray[i]);
+ }
+ }
+
+ /**
+ * Sets the value of field 'schemeName'.
+ *
+ * @param schemeName
+ * the value of field 'schemeName'.
+ */
+ public void setSchemeName(final java.lang.String schemeName)
+ {
+ this._schemeName = schemeName;
+ }
+
+ /**
+ * Sets the value of field 'version'. The field 'version' has the following
+ * description: Jalview colour scheme document version.
+ *
+ *
+ * @param version
+ * the value of field 'version'.
+ */
+ public void setVersion(final java.lang.String version)
+ {
+ this._version = version;
+ }
+
+ /**
+ * Method unmarshal.
+ *
+ * @param reader
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @return the unmarshaled jalview.schemabinding.version2.JalviewUserColours
+ */
+ public static jalview.schemabinding.version2.JalviewUserColours unmarshal(
+ final java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ return (jalview.schemabinding.version2.JalviewUserColours) Unmarshaller
+ .unmarshal(
+ jalview.schemabinding.version2.JalviewUserColours.class,
+ reader);
+ }
+
+ /**
+ *
+ *
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void validate() throws org.exolab.castor.xml.ValidationException
+ {
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+ validator.validate(this);
+ }
+
+}
git://source.jalview.org / jalview.git / blobdiff