Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JAL-3063_JAL-1767' into develop

[jalview.git] / src / jalview / schemabinding / version2 / PcaDataType.java

diff --git a/src/jalview/schemabinding/version2/PcaDataType.java b/src/jalview/schemabinding/version2/PcaDataType.java
new file mode 100644 (file)
index 0000000..42f1723
--- /dev/null
+++ b/src/jalview/schemabinding/version2/PcaDataType.java
@@ -0,0 +1,211 @@
+/*
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.schemabinding.version2;
+
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * The results of a PCA calculation
+ * 
+ * 
+ * @version $Revision$ $Date$
+ */
+public class PcaDataType implements java.io.Serializable
+{
+
+  // --------------------------/
+  // - Class/Member Variables -/
+  // --------------------------/
+
+  /**
+   * Field _pairwiseMatrix.
+   */
+  private jalview.schemabinding.version2.PairwiseMatrix _pairwiseMatrix;
+
+  /**
+   * Field _tridiagonalMatrix.
+   */
+  private jalview.schemabinding.version2.TridiagonalMatrix _tridiagonalMatrix;
+
+  /**
+   * Field _eigenMatrix.
+   */
+  private jalview.schemabinding.version2.EigenMatrix _eigenMatrix;
+
+  // ----------------/
+  // - Constructors -/
+  // ----------------/
+
+  public PcaDataType()
+  {
+    super();
+  }
+
+  // -----------/
+  // - Methods -/
+  // -----------/
+
+  /**
+   * Returns the value of field 'eigenMatrix'.
+   * 
+   * @return the value of field 'EigenMatrix'.
+   */
+  public jalview.schemabinding.version2.EigenMatrix getEigenMatrix()
+  {
+    return this._eigenMatrix;
+  }
+
+  /**
+   * Returns the value of field 'pairwiseMatrix'.
+   * 
+   * @return the value of field 'PairwiseMatrix'.
+   */
+  public jalview.schemabinding.version2.PairwiseMatrix getPairwiseMatrix()
+  {
+    return this._pairwiseMatrix;
+  }
+
+  /**
+   * Returns the value of field 'tridiagonalMatrix'.
+   * 
+   * @return the value of field 'TridiagonalMatrix'.
+   */
+  public jalview.schemabinding.version2.TridiagonalMatrix getTridiagonalMatrix()
+  {
+    return this._tridiagonalMatrix;
+  }
+
+  /**
+   * Method isValid.
+   * 
+   * @return true if this object is valid according to the schema
+   */
+  public boolean isValid()
+  {
+    try
+    {
+      validate();
+    } catch (org.exolab.castor.xml.ValidationException vex)
+    {
+      return false;
+    }
+    return true;
+  }
+
+  /**
+   * 
+   * 
+   * @param out
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   */
+  public void marshal(final java.io.Writer out)
+          throws org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    Marshaller.marshal(this, out);
+  }
+
+  /**
+   * 
+   * 
+   * @param handler
+   * @throws java.io.IOException
+   *           if an IOException occurs during marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   */
+  public void marshal(final org.xml.sax.ContentHandler handler)
+          throws java.io.IOException,
+          org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    Marshaller.marshal(this, handler);
+  }
+
+  /**
+   * Sets the value of field 'eigenMatrix'.
+   * 
+   * @param eigenMatrix
+   *          the value of field 'eigenMatrix'.
+   */
+  public void setEigenMatrix(
+          final jalview.schemabinding.version2.EigenMatrix eigenMatrix)
+  {
+    this._eigenMatrix = eigenMatrix;
+  }
+
+  /**
+   * Sets the value of field 'pairwiseMatrix'.
+   * 
+   * @param pairwiseMatrix
+   *          the value of field 'pairwiseMatrix'.
+   */
+  public void setPairwiseMatrix(
+          final jalview.schemabinding.version2.PairwiseMatrix pairwiseMatrix)
+  {
+    this._pairwiseMatrix = pairwiseMatrix;
+  }
+
+  /**
+   * Sets the value of field 'tridiagonalMatrix'.
+   * 
+   * @param tridiagonalMatrix
+   *          the value of field 'tridiagonalMatrix'.
+   */
+  public void setTridiagonalMatrix(
+          final jalview.schemabinding.version2.TridiagonalMatrix tridiagonalMatrix)
+  {
+    this._tridiagonalMatrix = tridiagonalMatrix;
+  }
+
+  /**
+   * Method unmarshal.
+   * 
+   * @param reader
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   * @return the unmarshaled jalview.schemabinding.version2.PcaDataType
+   */
+  public static jalview.schemabinding.version2.PcaDataType unmarshal(
+          final java.io.Reader reader)
+          throws org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    return (jalview.schemabinding.version2.PcaDataType) Unmarshaller
+            .unmarshal(jalview.schemabinding.version2.PcaDataType.class,
+                    reader);
+  }
+
+  /**
+   * 
+   * 
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   */
+  public void validate() throws org.exolab.castor.xml.ValidationException
+  {
+    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+    validator.validate(this);
+  }
+
+}