/*\r
- * This class was automatically generated with\r
+ * This class was automatically generated with \r
* <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
* Schema.\r
* $Id$\r
\r
package jalview.schemabinding.version2;\r
\r
+ //---------------------------------/\r
+ //- Imported classes and packages -/\r
//---------------------------------/\r
-//- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import java.util.*;\r
\r
-import org.exolab.castor.xml.*;\r
+import java.io.IOException;\r
+import java.io.Reader;\r
+import java.io.Serializable;\r
+import java.io.Writer;\r
+import java.util.Enumeration;\r
+import java.util.Vector;\r
+import org.exolab.castor.xml.MarshalException;\r
+import org.exolab.castor.xml.Marshaller;\r
+import org.exolab.castor.xml.Unmarshaller;\r
+import org.exolab.castor.xml.ValidationException;\r
+import org.xml.sax.ContentHandler;\r
\r
/**\r
* Class SequenceSet.\r
- *\r
+ * \r
* @version $Revision$ $Date$\r
*/\r
-public class SequenceSet\r
- implements java.io.Serializable\r
-{\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field _gapChar\r
- */\r
- private java.lang.String _gapChar;\r
-\r
- /**\r
- * Field _sequenceList\r
- */\r
- private java.util.Vector _sequenceList;\r
-\r
- /**\r
- * Field _annotationList\r
- */\r
- private java.util.Vector _annotationList;\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public SequenceSet()\r
- {\r
- super();\r
- _sequenceList = new Vector();\r
- _annotationList = new Vector();\r
- } //-- jalview.schemabinding.version2.SequenceSet()\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method addAnnotation\r
- *\r
- *\r
- *\r
- * @param vAnnotation\r
- */\r
- public void addAnnotation(jalview.schemabinding.version2.Annotation\r
- vAnnotation)\r
- throws java.lang.IndexOutOfBoundsException\r
- {\r
- _annotationList.addElement(vAnnotation);\r
- } //-- void addAnnotation(jalview.schemabinding.version2.Annotation)\r
-\r
- /**\r
- * Method addAnnotation\r
- *\r
- *\r
- *\r
- * @param index\r
- * @param vAnnotation\r
- */\r
- public void addAnnotation(int index,\r
- jalview.schemabinding.version2.Annotation\r
- vAnnotation)\r
- throws java.lang.IndexOutOfBoundsException\r
- {\r
- _annotationList.insertElementAt(vAnnotation, index);\r
- } //-- void addAnnotation(int, jalview.schemabinding.version2.Annotation)\r
-\r
- /**\r
- * Method addSequence\r
- *\r
- *\r
- *\r
- * @param vSequence\r
- */\r
- public void addSequence(jalview.schemabinding.version2.Sequence vSequence)\r
- throws java.lang.IndexOutOfBoundsException\r
- {\r
- _sequenceList.addElement(vSequence);\r
- } //-- void addSequence(jalview.schemabinding.version2.Sequence)\r
-\r
- /**\r
- * Method addSequence\r
- *\r
- *\r
- *\r
- * @param index\r
- * @param vSequence\r
- */\r
- public void addSequence(int index,\r
- jalview.schemabinding.version2.Sequence vSequence)\r
- throws java.lang.IndexOutOfBoundsException\r
- {\r
- _sequenceList.insertElementAt(vSequence, index);\r
- } //-- void addSequence(int, jalview.schemabinding.version2.Sequence)\r
-\r
- /**\r
- * Method enumerateAnnotation\r
- *\r
- *\r
- *\r
- * @return Enumeration\r
- */\r
- public java.util.Enumeration enumerateAnnotation()\r
- {\r
- return _annotationList.elements();\r
- } //-- java.util.Enumeration enumerateAnnotation()\r
-\r
- /**\r
- * Method enumerateSequence\r
- *\r
- *\r
- *\r
- * @return Enumeration\r
- */\r
- public java.util.Enumeration enumerateSequence()\r
- {\r
- return _sequenceList.elements();\r
- } //-- java.util.Enumeration enumerateSequence()\r
-\r
- /**\r
- * Method getAnnotation\r
- *\r
- *\r
- *\r
- * @param index\r
- * @return Annotation\r
- */\r
- public jalview.schemabinding.version2.Annotation getAnnotation(int index)\r
- throws java.lang.IndexOutOfBoundsException\r
- {\r
- //-- check bounds for index\r
- if ( (index < 0) || (index > _annotationList.size()))\r
+public class SequenceSet implements java.io.Serializable {\r
+\r
+\r
+ //--------------------------/\r
+ //- Class/Member Variables -/\r
+ //--------------------------/\r
+\r
+ /**\r
+ * Field _gapChar\r
+ */\r
+ private java.lang.String _gapChar;\r
+\r
+ /**\r
+ * Field _sequenceList\r
+ */\r
+ private java.util.Vector _sequenceList;\r
+\r
+ /**\r
+ * Field _annotationList\r
+ */\r
+ private java.util.Vector _annotationList;\r
+\r
+\r
+ //----------------/\r
+ //- Constructors -/\r
+ //----------------/\r
+\r
+ public SequenceSet() {\r
+ super();\r
+ _sequenceList = new Vector();\r
+ _annotationList = new Vector();\r
+ } //-- jalview.schemabinding.version2.SequenceSet()\r
+\r
+\r
+ //-----------/\r
+ //- Methods -/\r
+ //-----------/\r
+\r
+ /**\r
+ * Method addAnnotation\r
+ * \r
+ * \r
+ * \r
+ * @param vAnnotation\r
+ */\r
+ public void addAnnotation(jalview.schemabinding.version2.Annotation vAnnotation)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ _annotationList.addElement(vAnnotation);\r
+ } //-- void addAnnotation(jalview.schemabinding.version2.Annotation) \r
+\r
+ /**\r
+ * Method addAnnotation\r
+ * \r
+ * \r
+ * \r
+ * @param index\r
+ * @param vAnnotation\r
+ */\r
+ public void addAnnotation(int index, jalview.schemabinding.version2.Annotation vAnnotation)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ _annotationList.insertElementAt(vAnnotation, index);\r
+ } //-- void addAnnotation(int, jalview.schemabinding.version2.Annotation) \r
+\r
+ /**\r
+ * Method addSequence\r
+ * \r
+ * \r
+ * \r
+ * @param vSequence\r
+ */\r
+ public void addSequence(jalview.schemabinding.version2.Sequence vSequence)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ _sequenceList.addElement(vSequence);\r
+ } //-- void addSequence(jalview.schemabinding.version2.Sequence) \r
+\r
+ /**\r
+ * Method addSequence\r
+ * \r
+ * \r
+ * \r
+ * @param index\r
+ * @param vSequence\r
+ */\r
+ public void addSequence(int index, jalview.schemabinding.version2.Sequence vSequence)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ _sequenceList.insertElementAt(vSequence, index);\r
+ } //-- void addSequence(int, jalview.schemabinding.version2.Sequence) \r
+\r
+ /**\r
+ * Method enumerateAnnotation\r
+ * \r
+ * \r
+ * \r
+ * @return Enumeration\r
+ */\r
+ public java.util.Enumeration enumerateAnnotation()\r
+ {\r
+ return _annotationList.elements();\r
+ } //-- java.util.Enumeration enumerateAnnotation() \r
+\r
+ /**\r
+ * Method enumerateSequence\r
+ * \r
+ * \r
+ * \r
+ * @return Enumeration\r
+ */\r
+ public java.util.Enumeration enumerateSequence()\r
+ {\r
+ return _sequenceList.elements();\r
+ } //-- java.util.Enumeration enumerateSequence() \r
+\r
+ /**\r
+ * Method getAnnotation\r
+ * \r
+ * \r
+ * \r
+ * @param index\r
+ * @return Annotation\r
+ */\r
+ public jalview.schemabinding.version2.Annotation getAnnotation(int index)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ //-- check bounds for index\r
+ if ((index < 0) || (index > _annotationList.size())) {\r
+ throw new IndexOutOfBoundsException();\r
+ }\r
+ \r
+ return (jalview.schemabinding.version2.Annotation) _annotationList.elementAt(index);\r
+ } //-- jalview.schemabinding.version2.Annotation getAnnotation(int) \r
+\r
+ /**\r
+ * Method getAnnotation\r
+ * \r
+ * \r
+ * \r
+ * @return Annotation\r
+ */\r
+ public jalview.schemabinding.version2.Annotation[] getAnnotation()\r
+ {\r
+ int size = _annotationList.size();\r
+ jalview.schemabinding.version2.Annotation[] mArray = new jalview.schemabinding.version2.Annotation[size];\r
+ for (int index = 0; index < size; index++) {\r
+ mArray[index] = (jalview.schemabinding.version2.Annotation) _annotationList.elementAt(index);\r
+ }\r
+ return mArray;\r
+ } //-- jalview.schemabinding.version2.Annotation[] getAnnotation() \r
+\r
+ /**\r
+ * Method getAnnotationCount\r
+ * \r
+ * \r
+ * \r
+ * @return int\r
+ */\r
+ public int getAnnotationCount()\r
+ {\r
+ return _annotationList.size();\r
+ } //-- int getAnnotationCount() \r
+\r
+ /**\r
+ * Returns the value of field 'gapChar'.\r
+ * \r
+ * @return String\r
+ * @return the value of field 'gapChar'.\r
+ */\r
+ public java.lang.String getGapChar()\r
+ {\r
+ return this._gapChar;\r
+ } //-- java.lang.String getGapChar() \r
+\r
+ /**\r
+ * Method getSequence\r
+ * \r
+ * \r
+ * \r
+ * @param index\r
+ * @return Sequence\r
+ */\r
+ public jalview.schemabinding.version2.Sequence getSequence(int index)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ //-- check bounds for index\r
+ if ((index < 0) || (index > _sequenceList.size())) {\r
+ throw new IndexOutOfBoundsException();\r
+ }\r
+ \r
+ return (jalview.schemabinding.version2.Sequence) _sequenceList.elementAt(index);\r
+ } //-- jalview.schemabinding.version2.Sequence getSequence(int) \r
+\r
+ /**\r
+ * Method getSequence\r
+ * \r
+ * \r
+ * \r
+ * @return Sequence\r
+ */\r
+ public jalview.schemabinding.version2.Sequence[] getSequence()\r
+ {\r
+ int size = _sequenceList.size();\r
+ jalview.schemabinding.version2.Sequence[] mArray = new jalview.schemabinding.version2.Sequence[size];\r
+ for (int index = 0; index < size; index++) {\r
+ mArray[index] = (jalview.schemabinding.version2.Sequence) _sequenceList.elementAt(index);\r
+ }\r
+ return mArray;\r
+ } //-- jalview.schemabinding.version2.Sequence[] getSequence() \r
+\r
+ /**\r
+ * Method getSequenceCount\r
+ * \r
+ * \r
+ * \r
+ * @return int\r
+ */\r
+ public int getSequenceCount()\r
+ {\r
+ return _sequenceList.size();\r
+ } //-- int getSequenceCount() \r
+\r
+ /**\r
+ * Method isValid\r
+ * \r
+ * \r
+ * \r
+ * @return boolean\r
+ */\r
+ public boolean isValid()\r
+ {\r
+ try {\r
+ validate();\r
+ }\r
+ catch (org.exolab.castor.xml.ValidationException vex) {\r
+ return false;\r
+ }\r
+ return true;\r
+ } //-- boolean isValid() \r
+\r
+ /**\r
+ * Method marshal\r
+ * \r
+ * \r
+ * \r
+ * @param out\r
+ */\r
+ public void marshal(java.io.Writer out)\r
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ {\r
+ \r
+ Marshaller.marshal(this, out);\r
+ } //-- void marshal(java.io.Writer) \r
+\r
+ /**\r
+ * Method marshal\r
+ * \r
+ * \r
+ * \r
+ * @param handler\r
+ */\r
+ public void marshal(org.xml.sax.ContentHandler handler)\r
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ {\r
+ \r
+ Marshaller.marshal(this, handler);\r
+ } //-- void marshal(org.xml.sax.ContentHandler) \r
+\r
+ /**\r
+ * Method removeAllAnnotation\r
+ * \r
+ */\r
+ public void removeAllAnnotation()\r
+ {\r
+ _annotationList.removeAllElements();\r
+ } //-- void removeAllAnnotation() \r
+\r
+ /**\r
+ * Method removeAllSequence\r
+ * \r
+ */\r
+ public void removeAllSequence()\r
{\r
- throw new IndexOutOfBoundsException();\r
- }\r
-\r
- return (jalview.schemabinding.version2.Annotation) _annotationList.\r
- elementAt(index);\r
- } //-- jalview.schemabinding.version2.Annotation getAnnotation(int)\r
-\r
- /**\r
- * Method getAnnotation\r
- *\r
- *\r
- *\r
- * @return Annotation\r
- */\r
- public jalview.schemabinding.version2.Annotation[] getAnnotation()\r
- {\r
- int size = _annotationList.size();\r
- jalview.schemabinding.version2.Annotation[] mArray = new jalview.\r
- schemabinding.version2.Annotation[size];\r
- for (int index = 0; index < size; index++)\r
+ _sequenceList.removeAllElements();\r
+ } //-- void removeAllSequence() \r
+\r
+ /**\r
+ * Method removeAnnotation\r
+ * \r
+ * \r
+ * \r
+ * @param index\r
+ * @return Annotation\r
+ */\r
+ public jalview.schemabinding.version2.Annotation removeAnnotation(int index)\r
{\r
- mArray[index] = (jalview.schemabinding.version2.Annotation)\r
- _annotationList.elementAt(index);\r
- }\r
- return mArray;\r
- } //-- jalview.schemabinding.version2.Annotation[] getAnnotation()\r
-\r
- /**\r
- * Method getAnnotationCount\r
- *\r
- *\r
- *\r
- * @return int\r
- */\r
- public int getAnnotationCount()\r
- {\r
- return _annotationList.size();\r
- } //-- int getAnnotationCount()\r
-\r
- /**\r
- * Returns the value of field 'gapChar'.\r
- *\r
- * @return String\r
- * @return the value of field 'gapChar'.\r
- */\r
- public java.lang.String getGapChar()\r
- {\r
- return this._gapChar;\r
- } //-- java.lang.String getGapChar()\r
-\r
- /**\r
- * Method getSequence\r
- *\r
- *\r
- *\r
- * @param index\r
- * @return Sequence\r
- */\r
- public jalview.schemabinding.version2.Sequence getSequence(int index)\r
- throws java.lang.IndexOutOfBoundsException\r
- {\r
- //-- check bounds for index\r
- if ( (index < 0) || (index > _sequenceList.size()))\r
+ java.lang.Object obj = _annotationList.elementAt(index);\r
+ _annotationList.removeElementAt(index);\r
+ return (jalview.schemabinding.version2.Annotation) obj;\r
+ } //-- jalview.schemabinding.version2.Annotation removeAnnotation(int) \r
+\r
+ /**\r
+ * Method removeSequence\r
+ * \r
+ * \r
+ * \r
+ * @param index\r
+ * @return Sequence\r
+ */\r
+ public jalview.schemabinding.version2.Sequence removeSequence(int index)\r
{\r
- throw new IndexOutOfBoundsException();\r
- }\r
-\r
- return (jalview.schemabinding.version2.Sequence) _sequenceList.elementAt(\r
- index);\r
- } //-- jalview.schemabinding.version2.Sequence getSequence(int)\r
-\r
- /**\r
- * Method getSequence\r
- *\r
- *\r
- *\r
- * @return Sequence\r
- */\r
- public jalview.schemabinding.version2.Sequence[] getSequence()\r
- {\r
- int size = _sequenceList.size();\r
- jalview.schemabinding.version2.Sequence[] mArray = new jalview.\r
- schemabinding.version2.Sequence[size];\r
- for (int index = 0; index < size; index++)\r
+ java.lang.Object obj = _sequenceList.elementAt(index);\r
+ _sequenceList.removeElementAt(index);\r
+ return (jalview.schemabinding.version2.Sequence) obj;\r
+ } //-- jalview.schemabinding.version2.Sequence removeSequence(int) \r
+\r
+ /**\r
+ * Method setAnnotation\r
+ * \r
+ * \r
+ * \r
+ * @param index\r
+ * @param vAnnotation\r
+ */\r
+ public void setAnnotation(int index, jalview.schemabinding.version2.Annotation vAnnotation)\r
+ throws java.lang.IndexOutOfBoundsException\r
{\r
- mArray[index] = (jalview.schemabinding.version2.Sequence) _sequenceList.\r
- elementAt(index);\r
- }\r
- return mArray;\r
- } //-- jalview.schemabinding.version2.Sequence[] getSequence()\r
-\r
- /**\r
- * Method getSequenceCount\r
- *\r
- *\r
- *\r
- * @return int\r
- */\r
- public int getSequenceCount()\r
- {\r
- return _sequenceList.size();\r
- } //-- int getSequenceCount()\r
-\r
- /**\r
- * Method isValid\r
- *\r
- *\r
- *\r
- * @return boolean\r
- */\r
- public boolean isValid()\r
- {\r
- try\r
+ //-- check bounds for index\r
+ if ((index < 0) || (index > _annotationList.size())) {\r
+ throw new IndexOutOfBoundsException();\r
+ }\r
+ _annotationList.setElementAt(vAnnotation, index);\r
+ } //-- void setAnnotation(int, jalview.schemabinding.version2.Annotation) \r
+\r
+ /**\r
+ * Method setAnnotation\r
+ * \r
+ * \r
+ * \r
+ * @param annotationArray\r
+ */\r
+ public void setAnnotation(jalview.schemabinding.version2.Annotation[] annotationArray)\r
{\r
- validate();\r
- }\r
- catch (org.exolab.castor.xml.ValidationException vex)\r
+ //-- copy array\r
+ _annotationList.removeAllElements();\r
+ for (int i = 0; i < annotationArray.length; i++) {\r
+ _annotationList.addElement(annotationArray[i]);\r
+ }\r
+ } //-- void setAnnotation(jalview.schemabinding.version2.Annotation) \r
+\r
+ /**\r
+ * Sets the value of field 'gapChar'.\r
+ * \r
+ * @param gapChar the value of field 'gapChar'.\r
+ */\r
+ public void setGapChar(java.lang.String gapChar)\r
{\r
- return false;\r
- }\r
- return true;\r
- } //-- boolean isValid()\r
-\r
- /**\r
- * Method marshal\r
- *\r
- *\r
- *\r
- * @param out\r
- */\r
- public void marshal(java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
-\r
- Marshaller.marshal(this, out);\r
- } //-- void marshal(java.io.Writer)\r
-\r
- /**\r
- * Method marshal\r
- *\r
- *\r
- *\r
- * @param handler\r
- */\r
- public void marshal(org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException, org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
-\r
- Marshaller.marshal(this, handler);\r
- } //-- void marshal(org.xml.sax.ContentHandler)\r
-\r
- /**\r
- * Method removeAllAnnotation\r
- *\r
- */\r
- public void removeAllAnnotation()\r
- {\r
- _annotationList.removeAllElements();\r
- } //-- void removeAllAnnotation()\r
-\r
- /**\r
- * Method removeAllSequence\r
- *\r
- */\r
- public void removeAllSequence()\r
- {\r
- _sequenceList.removeAllElements();\r
- } //-- void removeAllSequence()\r
-\r
- /**\r
- * Method removeAnnotation\r
- *\r
- *\r
- *\r
- * @param index\r
- * @return Annotation\r
- */\r
- public jalview.schemabinding.version2.Annotation removeAnnotation(int index)\r
- {\r
- java.lang.Object obj = _annotationList.elementAt(index);\r
- _annotationList.removeElementAt(index);\r
- return (jalview.schemabinding.version2.Annotation) obj;\r
- } //-- jalview.schemabinding.version2.Annotation removeAnnotation(int)\r
-\r
- /**\r
- * Method removeSequence\r
- *\r
- *\r
- *\r
- * @param index\r
- * @return Sequence\r
- */\r
- public jalview.schemabinding.version2.Sequence removeSequence(int index)\r
- {\r
- java.lang.Object obj = _sequenceList.elementAt(index);\r
- _sequenceList.removeElementAt(index);\r
- return (jalview.schemabinding.version2.Sequence) obj;\r
- } //-- jalview.schemabinding.version2.Sequence removeSequence(int)\r
-\r
- /**\r
- * Method setAnnotation\r
- *\r
- *\r
- *\r
- * @param index\r
- * @param vAnnotation\r
- */\r
- public void setAnnotation(int index,\r
- jalview.schemabinding.version2.Annotation\r
- vAnnotation)\r
- throws java.lang.IndexOutOfBoundsException\r
- {\r
- //-- check bounds for index\r
- if ( (index < 0) || (index > _annotationList.size()))\r
+ this._gapChar = gapChar;\r
+ } //-- void setGapChar(java.lang.String) \r
+\r
+ /**\r
+ * Method setSequence\r
+ * \r
+ * \r
+ * \r
+ * @param index\r
+ * @param vSequence\r
+ */\r
+ public void setSequence(int index, jalview.schemabinding.version2.Sequence vSequence)\r
+ throws java.lang.IndexOutOfBoundsException\r
{\r
- throw new IndexOutOfBoundsException();\r
- }\r
- _annotationList.setElementAt(vAnnotation, index);\r
- } //-- void setAnnotation(int, jalview.schemabinding.version2.Annotation)\r
-\r
- /**\r
- * Method setAnnotation\r
- *\r
- *\r
- *\r
- * @param annotationArray\r
- */\r
- public void setAnnotation(jalview.schemabinding.version2.Annotation[]\r
- annotationArray)\r
- {\r
- //-- copy array\r
- _annotationList.removeAllElements();\r
- for (int i = 0; i < annotationArray.length; i++)\r
+ //-- check bounds for index\r
+ if ((index < 0) || (index > _sequenceList.size())) {\r
+ throw new IndexOutOfBoundsException();\r
+ }\r
+ _sequenceList.setElementAt(vSequence, index);\r
+ } //-- void setSequence(int, jalview.schemabinding.version2.Sequence) \r
+\r
+ /**\r
+ * Method setSequence\r
+ * \r
+ * \r
+ * \r
+ * @param sequenceArray\r
+ */\r
+ public void setSequence(jalview.schemabinding.version2.Sequence[] sequenceArray)\r
{\r
- _annotationList.addElement(annotationArray[i]);\r
- }\r
- } //-- void setAnnotation(jalview.schemabinding.version2.Annotation)\r
-\r
- /**\r
- * Sets the value of field 'gapChar'.\r
- *\r
- * @param gapChar the value of field 'gapChar'.\r
- */\r
- public void setGapChar(java.lang.String gapChar)\r
- {\r
- this._gapChar = gapChar;\r
- } //-- void setGapChar(java.lang.String)\r
-\r
- /**\r
- * Method setSequence\r
- *\r
- *\r
- *\r
- * @param index\r
- * @param vSequence\r
- */\r
- public void setSequence(int index,\r
- jalview.schemabinding.version2.Sequence vSequence)\r
- throws java.lang.IndexOutOfBoundsException\r
- {\r
- //-- check bounds for index\r
- if ( (index < 0) || (index > _sequenceList.size()))\r
+ //-- copy array\r
+ _sequenceList.removeAllElements();\r
+ for (int i = 0; i < sequenceArray.length; i++) {\r
+ _sequenceList.addElement(sequenceArray[i]);\r
+ }\r
+ } //-- void setSequence(jalview.schemabinding.version2.Sequence) \r
+\r
+ /**\r
+ * Method unmarshal\r
+ * \r
+ * \r
+ * \r
+ * @param reader\r
+ * @return Object\r
+ */\r
+ public static java.lang.Object unmarshal(java.io.Reader reader)\r
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
{\r
- throw new IndexOutOfBoundsException();\r
- }\r
- _sequenceList.setElementAt(vSequence, index);\r
- } //-- void setSequence(int, jalview.schemabinding.version2.Sequence)\r
-\r
- /**\r
- * Method setSequence\r
- *\r
- *\r
- *\r
- * @param sequenceArray\r
- */\r
- public void setSequence(jalview.schemabinding.version2.Sequence[]\r
- sequenceArray)\r
- {\r
- //-- copy array\r
- _sequenceList.removeAllElements();\r
- for (int i = 0; i < sequenceArray.length; i++)\r
+ return (jalview.schemabinding.version2.SequenceSet) Unmarshaller.unmarshal(jalview.schemabinding.version2.SequenceSet.class, reader);\r
+ } //-- java.lang.Object unmarshal(java.io.Reader) \r
+\r
+ /**\r
+ * Method validate\r
+ * \r
+ */\r
+ public void validate()\r
+ throws org.exolab.castor.xml.ValidationException\r
{\r
- _sequenceList.addElement(sequenceArray[i]);\r
- }\r
- } //-- void setSequence(jalview.schemabinding.version2.Sequence)\r
-\r
- /**\r
- * Method unmarshal\r
- *\r
- *\r
- *\r
- * @param reader\r
- * @return Object\r
- */\r
- public static java.lang.Object unmarshal(java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
- return (jalview.schemabinding.version2.SequenceSet) Unmarshaller.unmarshal(\r
- jalview.schemabinding.version2.SequenceSet.class, reader);\r
- } //-- java.lang.Object unmarshal(java.io.Reader)\r
-\r
- /**\r
- * Method validate\r
- *\r
- */\r
- public void validate()\r
- throws org.exolab.castor.xml.ValidationException\r
- {\r
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.\r
- Validator();\r
- validator.validate(this);\r
- } //-- void validate()\r
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
+ validator.validate(this);\r
+ } //-- void validate() \r
\r
}\r
git://source.jalview.org / jalview.git / blobdiff