/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
*
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
*/
package jalview.schemabinding.version2;
-// ---------------------------------/
-// - Imported classes and packages -/
-// ---------------------------------/
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
*/
private boolean _has_height;
+ /**
+ * additional identifier which properly disambiguates the structure view from
+ * any other view with the same attributes. This is not an ID, because it is
+ * possible to have many references to the same physical structure view from
+ * different sequences in an alignment. A structureState element citing the
+ * same viewId will appear for each instance.
+ */
+ private java.lang.String _viewId;
+
// ----------------/
// - Constructors -/
// ----------------/
// -----------/
/**
- */
+ */
public void deleteHeight()
{
this._has_height = false;
}
/**
- */
+ */
public void deleteVisible()
{
this._has_visible = false;
}
/**
- */
+ */
public void deleteWidth()
{
this._has_width = false;
}
/**
- */
+ */
public void deleteXpos()
{
this._has_xpos = false;
}
/**
- */
+ */
public void deleteYpos()
{
this._has_ypos = false;
}
/**
+ * Returns the value of field 'viewId'. The field 'viewId' has the following
+ * description: additional identifier which properly disambiguates the
+ * structure view from any other view with the same attributes. This is not an
+ * ID, because it is possible to have many references to the same physical
+ * structure view from different sequences in an alignment. A structureState
+ * element citing the same viewId will appear for each instance.
+ *
+ * @return the value of field 'ViewId'.
+ */
+ public java.lang.String getViewId()
+ {
+ return this._viewId;
+ }
+
+ /**
* Returns the value of field 'visible'.
*
* @return the value of field 'Visible'.
*
* @param out
* @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
+ * if object is null or if any SAXException is thrown during
+ * marshaling
* @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the
- * schema
+ * if this object is an invalid instance according to the schema
*/
public void marshal(final java.io.Writer out)
throws org.exolab.castor.xml.MarshalException,
*
* @param handler
* @throws java.io.IOException
- * if an IOException occurs during marshaling
+ * if an IOException occurs during marshaling
* @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the
- * schema
+ * if this object is an invalid instance according to the schema
* @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
+ * if object is null or if any SAXException is thrown during
+ * marshaling
*/
public void marshal(final org.xml.sax.ContentHandler handler)
throws java.io.IOException,
* description: internal content storage
*
* @param content
- * the value of field 'content'.
+ * the value of field 'content'.
*/
public void setContent(final java.lang.String content)
{
* Sets the value of field 'height'.
*
* @param height
- * the value of field 'height'.
+ * the value of field 'height'.
*/
public void setHeight(final int height)
{
}
/**
+ * Sets the value of field 'viewId'. The field 'viewId' has the following
+ * description: additional identifier which properly disambiguates the
+ * structure view from any other view with the same attributes. This is not an
+ * ID, because it is possible to have many references to the same physical
+ * structure view from different sequences in an alignment. A structureState
+ * element citing the same viewId will appear for each instance.
+ *
+ * @param viewId
+ * the value of field 'viewId'.
+ */
+ public void setViewId(final java.lang.String viewId)
+ {
+ this._viewId = viewId;
+ }
+
+ /**
* Sets the value of field 'visible'.
*
* @param visible
- * the value of field 'visible'.
+ * the value of field 'visible'.
*/
public void setVisible(final boolean visible)
{
* Sets the value of field 'width'.
*
* @param width
- * the value of field 'width'.
+ * the value of field 'width'.
*/
public void setWidth(final int width)
{
* Sets the value of field 'xpos'.
*
* @param xpos
- * the value of field 'xpos'.
+ * the value of field 'xpos'.
*/
public void setXpos(final int xpos)
{
* Sets the value of field 'ypos'.
*
* @param ypos
- * the value of field 'ypos'.
+ * the value of field 'ypos'.
*/
public void setYpos(final int ypos)
{
*
* @param reader
* @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
+ * if object is null or if any SAXException is thrown during
+ * marshaling
* @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the
- * schema
+ * if this object is an invalid instance according to the schema
* @return the unmarshaled jalview.schemabinding.version2.StructureState
*/
public static jalview.schemabinding.version2.StructureState unmarshal(
*
*
* @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the
- * schema
+ * if this object is an invalid instance according to the schema
*/
public void validate() throws org.exolab.castor.xml.ValidationException
{
git://source.jalview.org / jalview.git / blobdiff