/*\r
- * This class was automatically generated with \r
+ * This class was automatically generated with\r
* <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
* Schema.\r
* $Id$\r
\r
package jalview.schemabinding.version2;\r
\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
+//---------------------------------/\r
+//- Imported classes and packages -/\r
//---------------------------------/\r
\r
-import java.io.IOException;\r
-import java.io.Reader;\r
-import java.io.Serializable;\r
-import java.io.Writer;\r
-import org.exolab.castor.xml.MarshalException;\r
-import org.exolab.castor.xml.Marshaller;\r
-import org.exolab.castor.xml.Unmarshaller;\r
-import org.exolab.castor.xml.ValidationException;\r
-import org.xml.sax.ContentHandler;\r
+import org.exolab.castor.xml.*;\r
\r
/**\r
* Class Tree.\r
- * \r
+ *\r
* @version $Revision$ $Date$\r
*/\r
-public class Tree implements java.io.Serializable {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field _width\r
- */\r
- private int _width;\r
-\r
- /**\r
- * keeps track of state for field: _width\r
- */\r
- private boolean _has_width;\r
-\r
- /**\r
- * Field _height\r
- */\r
- private int _height;\r
-\r
- /**\r
- * keeps track of state for field: _height\r
- */\r
- private boolean _has_height;\r
-\r
- /**\r
- * Field _xpos\r
- */\r
- private int _xpos;\r
-\r
- /**\r
- * keeps track of state for field: _xpos\r
- */\r
- private boolean _has_xpos;\r
-\r
- /**\r
- * Field _ypos\r
- */\r
- private int _ypos;\r
-\r
- /**\r
- * keeps track of state for field: _ypos\r
- */\r
- private boolean _has_ypos;\r
-\r
- /**\r
- * Field _fontName\r
- */\r
- private java.lang.String _fontName;\r
-\r
- /**\r
- * Field _fontSize\r
- */\r
- private int _fontSize;\r
-\r
- /**\r
- * keeps track of state for field: _fontSize\r
- */\r
- private boolean _has_fontSize;\r
-\r
- /**\r
- * Field _fontStyle\r
- */\r
- private int _fontStyle;\r
-\r
- /**\r
- * keeps track of state for field: _fontStyle\r
- */\r
- private boolean _has_fontStyle;\r
-\r
- /**\r
- * Field _threshold\r
- */\r
- private float _threshold;\r
-\r
- /**\r
- * keeps track of state for field: _threshold\r
- */\r
- private boolean _has_threshold;\r
-\r
- /**\r
- * Field _showBootstrap\r
- */\r
- private boolean _showBootstrap;\r
-\r
- /**\r
- * keeps track of state for field: _showBootstrap\r
- */\r
- private boolean _has_showBootstrap;\r
-\r
- /**\r
- * Field _showDistances\r
- */\r
- private boolean _showDistances;\r
-\r
- /**\r
- * keeps track of state for field: _showDistances\r
- */\r
- private boolean _has_showDistances;\r
-\r
- /**\r
- * Field _markUnlinked\r
- */\r
- private boolean _markUnlinked;\r
-\r
- /**\r
- * keeps track of state for field: _markUnlinked\r
- */\r
- private boolean _has_markUnlinked;\r
-\r
- /**\r
- * Field _fitToWindow\r
- */\r
- private boolean _fitToWindow;\r
-\r
- /**\r
- * keeps track of state for field: _fitToWindow\r
- */\r
- private boolean _has_fitToWindow;\r
-\r
- /**\r
- * Field _currentTree\r
- */\r
- private boolean _currentTree;\r
-\r
- /**\r
- * keeps track of state for field: _currentTree\r
- */\r
- private boolean _has_currentTree;\r
-\r
- /**\r
- * Field _title\r
- */\r
- private java.lang.String _title;\r
-\r
- /**\r
- * Field _newick\r
- */\r
- private java.lang.String _newick;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public Tree() {\r
- super();\r
- } //-- jalview.schemabinding.version2.Tree()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method deleteCurrentTree\r
- * \r
- */\r
- public void deleteCurrentTree()\r
- {\r
- this._has_currentTree= false;\r
- } //-- void deleteCurrentTree() \r
-\r
- /**\r
- * Method deleteFitToWindow\r
- * \r
- */\r
- public void deleteFitToWindow()\r
- {\r
- this._has_fitToWindow= false;\r
- } //-- void deleteFitToWindow() \r
-\r
- /**\r
- * Method deleteFontSize\r
- * \r
- */\r
- public void deleteFontSize()\r
- {\r
- this._has_fontSize= false;\r
- } //-- void deleteFontSize() \r
-\r
- /**\r
- * Method deleteFontStyle\r
- * \r
- */\r
- public void deleteFontStyle()\r
- {\r
- this._has_fontStyle= false;\r
- } //-- void deleteFontStyle() \r
-\r
- /**\r
- * Method deleteHeight\r
- * \r
- */\r
- public void deleteHeight()\r
- {\r
- this._has_height= false;\r
- } //-- void deleteHeight() \r
-\r
- /**\r
- * Method deleteMarkUnlinked\r
- * \r
- */\r
- public void deleteMarkUnlinked()\r
- {\r
- this._has_markUnlinked= false;\r
- } //-- void deleteMarkUnlinked() \r
-\r
- /**\r
- * Method deleteShowBootstrap\r
- * \r
- */\r
- public void deleteShowBootstrap()\r
- {\r
- this._has_showBootstrap= false;\r
- } //-- void deleteShowBootstrap() \r
-\r
- /**\r
- * Method deleteShowDistances\r
- * \r
- */\r
- public void deleteShowDistances()\r
- {\r
- this._has_showDistances= false;\r
- } //-- void deleteShowDistances() \r
-\r
- /**\r
- * Method deleteThreshold\r
- * \r
- */\r
- public void deleteThreshold()\r
- {\r
- this._has_threshold= false;\r
- } //-- void deleteThreshold() \r
-\r
- /**\r
- * Method deleteWidth\r
- * \r
- */\r
- public void deleteWidth()\r
- {\r
- this._has_width= false;\r
- } //-- void deleteWidth() \r
-\r
- /**\r
- * Method deleteXpos\r
- * \r
- */\r
- public void deleteXpos()\r
- {\r
- this._has_xpos= false;\r
- } //-- void deleteXpos() \r
-\r
- /**\r
- * Method deleteYpos\r
- * \r
- */\r
- public void deleteYpos()\r
- {\r
- this._has_ypos= false;\r
- } //-- void deleteYpos() \r
-\r
- /**\r
- * Returns the value of field 'currentTree'.\r
- * \r
- * @return boolean\r
- * @return the value of field 'currentTree'.\r
- */\r
- public boolean getCurrentTree()\r
- {\r
- return this._currentTree;\r
- } //-- boolean getCurrentTree() \r
-\r
- /**\r
- * Returns the value of field 'fitToWindow'.\r
- * \r
- * @return boolean\r
- * @return the value of field 'fitToWindow'.\r
- */\r
- public boolean getFitToWindow()\r
- {\r
- return this._fitToWindow;\r
- } //-- boolean getFitToWindow() \r
-\r
- /**\r
- * Returns the value of field 'fontName'.\r
- * \r
- * @return String\r
- * @return the value of field 'fontName'.\r
- */\r
- public java.lang.String getFontName()\r
- {\r
- return this._fontName;\r
- } //-- java.lang.String getFontName() \r
-\r
- /**\r
- * Returns the value of field 'fontSize'.\r
- * \r
- * @return int\r
- * @return the value of field 'fontSize'.\r
- */\r
- public int getFontSize()\r
- {\r
- return this._fontSize;\r
- } //-- int getFontSize() \r
-\r
- /**\r
- * Returns the value of field 'fontStyle'.\r
- * \r
- * @return int\r
- * @return the value of field 'fontStyle'.\r
- */\r
- public int getFontStyle()\r
- {\r
- return this._fontStyle;\r
- } //-- int getFontStyle() \r
-\r
- /**\r
- * Returns the value of field 'height'.\r
- * \r
- * @return int\r
- * @return the value of field 'height'.\r
- */\r
- public int getHeight()\r
- {\r
- return this._height;\r
- } //-- int getHeight() \r
-\r
- /**\r
- * Returns the value of field 'markUnlinked'.\r
- * \r
- * @return boolean\r
- * @return the value of field 'markUnlinked'.\r
- */\r
- public boolean getMarkUnlinked()\r
- {\r
- return this._markUnlinked;\r
- } //-- boolean getMarkUnlinked() \r
-\r
- /**\r
- * Returns the value of field 'newick'.\r
- * \r
- * @return String\r
- * @return the value of field 'newick'.\r
- */\r
- public java.lang.String getNewick()\r
- {\r
- return this._newick;\r
- } //-- java.lang.String getNewick() \r
-\r
- /**\r
- * Returns the value of field 'showBootstrap'.\r
- * \r
- * @return boolean\r
- * @return the value of field 'showBootstrap'.\r
- */\r
- public boolean getShowBootstrap()\r
- {\r
- return this._showBootstrap;\r
- } //-- boolean getShowBootstrap() \r
-\r
- /**\r
- * Returns the value of field 'showDistances'.\r
- * \r
- * @return boolean\r
- * @return the value of field 'showDistances'.\r
- */\r
- public boolean getShowDistances()\r
- {\r
- return this._showDistances;\r
- } //-- boolean getShowDistances() \r
-\r
- /**\r
- * Returns the value of field 'threshold'.\r
- * \r
- * @return float\r
- * @return the value of field 'threshold'.\r
- */\r
- public float getThreshold()\r
- {\r
- return this._threshold;\r
- } //-- float getThreshold() \r
-\r
- /**\r
- * Returns the value of field 'title'.\r
- * \r
- * @return String\r
- * @return the value of field 'title'.\r
- */\r
- public java.lang.String getTitle()\r
- {\r
- return this._title;\r
- } //-- java.lang.String getTitle() \r
-\r
- /**\r
- * Returns the value of field 'width'.\r
- * \r
- * @return int\r
- * @return the value of field 'width'.\r
- */\r
- public int getWidth()\r
- {\r
- return this._width;\r
- } //-- int getWidth() \r
-\r
- /**\r
- * Returns the value of field 'xpos'.\r
- * \r
- * @return int\r
- * @return the value of field 'xpos'.\r
- */\r
- public int getXpos()\r
- {\r
- return this._xpos;\r
- } //-- int getXpos() \r
-\r
- /**\r
- * Returns the value of field 'ypos'.\r
- * \r
- * @return int\r
- * @return the value of field 'ypos'.\r
- */\r
- public int getYpos()\r
- {\r
- return this._ypos;\r
- } //-- int getYpos() \r
-\r
- /**\r
- * Method hasCurrentTree\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasCurrentTree()\r
- {\r
- return this._has_currentTree;\r
- } //-- boolean hasCurrentTree() \r
-\r
- /**\r
- * Method hasFitToWindow\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasFitToWindow()\r
- {\r
- return this._has_fitToWindow;\r
- } //-- boolean hasFitToWindow() \r
-\r
- /**\r
- * Method hasFontSize\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasFontSize()\r
- {\r
- return this._has_fontSize;\r
- } //-- boolean hasFontSize() \r
-\r
- /**\r
- * Method hasFontStyle\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasFontStyle()\r
- {\r
- return this._has_fontStyle;\r
- } //-- boolean hasFontStyle() \r
-\r
- /**\r
- * Method hasHeight\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasHeight()\r
- {\r
- return this._has_height;\r
- } //-- boolean hasHeight() \r
-\r
- /**\r
- * Method hasMarkUnlinked\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasMarkUnlinked()\r
- {\r
- return this._has_markUnlinked;\r
- } //-- boolean hasMarkUnlinked() \r
-\r
- /**\r
- * Method hasShowBootstrap\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasShowBootstrap()\r
- {\r
- return this._has_showBootstrap;\r
- } //-- boolean hasShowBootstrap() \r
-\r
- /**\r
- * Method hasShowDistances\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasShowDistances()\r
- {\r
- return this._has_showDistances;\r
- } //-- boolean hasShowDistances() \r
-\r
- /**\r
- * Method hasThreshold\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasThreshold()\r
- {\r
- return this._has_threshold;\r
- } //-- boolean hasThreshold() \r
-\r
- /**\r
- * Method hasWidth\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasWidth()\r
- {\r
- return this._has_width;\r
- } //-- boolean hasWidth() \r
-\r
- /**\r
- * Method hasXpos\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasXpos()\r
- {\r
- return this._has_xpos;\r
- } //-- boolean hasXpos() \r
-\r
- /**\r
- * Method hasYpos\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasYpos()\r
- {\r
- return this._has_ypos;\r
- } //-- boolean hasYpos() \r
-\r
- /**\r
- * Method isValid\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean isValid()\r
- {\r
- try {\r
- validate();\r
- }\r
- catch (org.exolab.castor.xml.ValidationException vex) {\r
- return false;\r
- }\r
- return true;\r
- } //-- boolean isValid() \r
-\r
- /**\r
- * Method marshal\r
- * \r
- * \r
- * \r
- * @param out\r
- */\r
- public void marshal(java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
- {\r
- \r
- Marshaller.marshal(this, out);\r
- } //-- void marshal(java.io.Writer) \r
-\r
- /**\r
- * Method marshal\r
- * \r
- * \r
- * \r
- * @param handler\r
- */\r
- public void marshal(org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
- {\r
- \r
- Marshaller.marshal(this, handler);\r
- } //-- void marshal(org.xml.sax.ContentHandler) \r
-\r
- /**\r
- * Sets the value of field 'currentTree'.\r
- * \r
- * @param currentTree the value of field 'currentTree'.\r
- */\r
- public void setCurrentTree(boolean currentTree)\r
- {\r
- this._currentTree = currentTree;\r
- this._has_currentTree = true;\r
- } //-- void setCurrentTree(boolean) \r
-\r
- /**\r
- * Sets the value of field 'fitToWindow'.\r
- * \r
- * @param fitToWindow the value of field 'fitToWindow'.\r
- */\r
- public void setFitToWindow(boolean fitToWindow)\r
- {\r
- this._fitToWindow = fitToWindow;\r
- this._has_fitToWindow = true;\r
- } //-- void setFitToWindow(boolean) \r
-\r
- /**\r
- * Sets the value of field 'fontName'.\r
- * \r
- * @param fontName the value of field 'fontName'.\r
- */\r
- public void setFontName(java.lang.String fontName)\r
- {\r
- this._fontName = fontName;\r
- } //-- void setFontName(java.lang.String) \r
-\r
- /**\r
- * Sets the value of field 'fontSize'.\r
- * \r
- * @param fontSize the value of field 'fontSize'.\r
- */\r
- public void setFontSize(int fontSize)\r
- {\r
- this._fontSize = fontSize;\r
- this._has_fontSize = true;\r
- } //-- void setFontSize(int) \r
-\r
- /**\r
- * Sets the value of field 'fontStyle'.\r
- * \r
- * @param fontStyle the value of field 'fontStyle'.\r
- */\r
- public void setFontStyle(int fontStyle)\r
- {\r
- this._fontStyle = fontStyle;\r
- this._has_fontStyle = true;\r
- } //-- void setFontStyle(int) \r
-\r
- /**\r
- * Sets the value of field 'height'.\r
- * \r
- * @param height the value of field 'height'.\r
- */\r
- public void setHeight(int height)\r
- {\r
- this._height = height;\r
- this._has_height = true;\r
- } //-- void setHeight(int) \r
-\r
- /**\r
- * Sets the value of field 'markUnlinked'.\r
- * \r
- * @param markUnlinked the value of field 'markUnlinked'.\r
- */\r
- public void setMarkUnlinked(boolean markUnlinked)\r
- {\r
- this._markUnlinked = markUnlinked;\r
- this._has_markUnlinked = true;\r
- } //-- void setMarkUnlinked(boolean) \r
-\r
- /**\r
- * Sets the value of field 'newick'.\r
- * \r
- * @param newick the value of field 'newick'.\r
- */\r
- public void setNewick(java.lang.String newick)\r
- {\r
- this._newick = newick;\r
- } //-- void setNewick(java.lang.String) \r
-\r
- /**\r
- * Sets the value of field 'showBootstrap'.\r
- * \r
- * @param showBootstrap the value of field 'showBootstrap'.\r
- */\r
- public void setShowBootstrap(boolean showBootstrap)\r
- {\r
- this._showBootstrap = showBootstrap;\r
- this._has_showBootstrap = true;\r
- } //-- void setShowBootstrap(boolean) \r
-\r
- /**\r
- * Sets the value of field 'showDistances'.\r
- * \r
- * @param showDistances the value of field 'showDistances'.\r
- */\r
- public void setShowDistances(boolean showDistances)\r
- {\r
- this._showDistances = showDistances;\r
- this._has_showDistances = true;\r
- } //-- void setShowDistances(boolean) \r
-\r
- /**\r
- * Sets the value of field 'threshold'.\r
- * \r
- * @param threshold the value of field 'threshold'.\r
- */\r
- public void setThreshold(float threshold)\r
- {\r
- this._threshold = threshold;\r
- this._has_threshold = true;\r
- } //-- void setThreshold(float) \r
-\r
- /**\r
- * Sets the value of field 'title'.\r
- * \r
- * @param title the value of field 'title'.\r
- */\r
- public void setTitle(java.lang.String title)\r
- {\r
- this._title = title;\r
- } //-- void setTitle(java.lang.String) \r
-\r
- /**\r
- * Sets the value of field 'width'.\r
- * \r
- * @param width the value of field 'width'.\r
- */\r
- public void setWidth(int width)\r
- {\r
- this._width = width;\r
- this._has_width = true;\r
- } //-- void setWidth(int) \r
-\r
- /**\r
- * Sets the value of field 'xpos'.\r
- * \r
- * @param xpos the value of field 'xpos'.\r
- */\r
- public void setXpos(int xpos)\r
- {\r
- this._xpos = xpos;\r
- this._has_xpos = true;\r
- } //-- void setXpos(int) \r
-\r
- /**\r
- * Sets the value of field 'ypos'.\r
- * \r
- * @param ypos the value of field 'ypos'.\r
- */\r
- public void setYpos(int ypos)\r
- {\r
- this._ypos = ypos;\r
- this._has_ypos = true;\r
- } //-- void setYpos(int) \r
-\r
- /**\r
- * Method unmarshal\r
- * \r
- * \r
- * \r
- * @param reader\r
- * @return Object\r
- */\r
- public static java.lang.Object unmarshal(java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
- {\r
- return (jalview.schemabinding.version2.Tree) Unmarshaller.unmarshal(jalview.schemabinding.version2.Tree.class, reader);\r
- } //-- java.lang.Object unmarshal(java.io.Reader) \r
-\r
- /**\r
- * Method validate\r
- * \r
- */\r
- public void validate()\r
- throws org.exolab.castor.xml.ValidationException\r
- {\r
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
- validator.validate(this);\r
- } //-- void validate() \r
+public class Tree\r
+ implements java.io.Serializable\r
+{\r
+\r
+ //--------------------------/\r
+ //- Class/Member Variables -/\r
+ //--------------------------/\r
+\r
+ /**\r
+ * Field _width\r
+ */\r
+ private int _width;\r
+\r
+ /**\r
+ * keeps track of state for field: _width\r
+ */\r
+ private boolean _has_width;\r
+\r
+ /**\r
+ * Field _height\r
+ */\r
+ private int _height;\r
+\r
+ /**\r
+ * keeps track of state for field: _height\r
+ */\r
+ private boolean _has_height;\r
+\r
+ /**\r
+ * Field _xpos\r
+ */\r
+ private int _xpos;\r
+\r
+ /**\r
+ * keeps track of state for field: _xpos\r
+ */\r
+ private boolean _has_xpos;\r
+\r
+ /**\r
+ * Field _ypos\r
+ */\r
+ private int _ypos;\r
+\r
+ /**\r
+ * keeps track of state for field: _ypos\r
+ */\r
+ private boolean _has_ypos;\r
+\r
+ /**\r
+ * Field _fontName\r
+ */\r
+ private java.lang.String _fontName;\r
+\r
+ /**\r
+ * Field _fontSize\r
+ */\r
+ private int _fontSize;\r
+\r
+ /**\r
+ * keeps track of state for field: _fontSize\r
+ */\r
+ private boolean _has_fontSize;\r
+\r
+ /**\r
+ * Field _fontStyle\r
+ */\r
+ private int _fontStyle;\r
+\r
+ /**\r
+ * keeps track of state for field: _fontStyle\r
+ */\r
+ private boolean _has_fontStyle;\r
+\r
+ /**\r
+ * Field _threshold\r
+ */\r
+ private float _threshold;\r
+\r
+ /**\r
+ * keeps track of state for field: _threshold\r
+ */\r
+ private boolean _has_threshold;\r
+\r
+ /**\r
+ * Field _showBootstrap\r
+ */\r
+ private boolean _showBootstrap;\r
+\r
+ /**\r
+ * keeps track of state for field: _showBootstrap\r
+ */\r
+ private boolean _has_showBootstrap;\r
+\r
+ /**\r
+ * Field _showDistances\r
+ */\r
+ private boolean _showDistances;\r
+\r
+ /**\r
+ * keeps track of state for field: _showDistances\r
+ */\r
+ private boolean _has_showDistances;\r
+\r
+ /**\r
+ * Field _markUnlinked\r
+ */\r
+ private boolean _markUnlinked;\r
+\r
+ /**\r
+ * keeps track of state for field: _markUnlinked\r
+ */\r
+ private boolean _has_markUnlinked;\r
+\r
+ /**\r
+ * Field _fitToWindow\r
+ */\r
+ private boolean _fitToWindow;\r
+\r
+ /**\r
+ * keeps track of state for field: _fitToWindow\r
+ */\r
+ private boolean _has_fitToWindow;\r
+\r
+ /**\r
+ * Field _currentTree\r
+ */\r
+ private boolean _currentTree;\r
+\r
+ /**\r
+ * keeps track of state for field: _currentTree\r
+ */\r
+ private boolean _has_currentTree;\r
+\r
+ /**\r
+ * Field _title\r
+ */\r
+ private java.lang.String _title;\r
+\r
+ /**\r
+ * Field _newick\r
+ */\r
+ private java.lang.String _newick;\r
+\r
+ //----------------/\r
+ //- Constructors -/\r
+ //----------------/\r
+\r
+ public Tree()\r
+ {\r
+ super();\r
+ } //-- jalview.schemabinding.version2.Tree()\r
+\r
+ //-----------/\r
+ //- Methods -/\r
+ //-----------/\r
+\r
+ /**\r
+ * Method deleteCurrentTree\r
+ *\r
+ */\r
+ public void deleteCurrentTree()\r
+ {\r
+ this._has_currentTree = false;\r
+ } //-- void deleteCurrentTree()\r
+\r
+ /**\r
+ * Method deleteFitToWindow\r
+ *\r
+ */\r
+ public void deleteFitToWindow()\r
+ {\r
+ this._has_fitToWindow = false;\r
+ } //-- void deleteFitToWindow()\r
+\r
+ /**\r
+ * Method deleteFontSize\r
+ *\r
+ */\r
+ public void deleteFontSize()\r
+ {\r
+ this._has_fontSize = false;\r
+ } //-- void deleteFontSize()\r
+\r
+ /**\r
+ * Method deleteFontStyle\r
+ *\r
+ */\r
+ public void deleteFontStyle()\r
+ {\r
+ this._has_fontStyle = false;\r
+ } //-- void deleteFontStyle()\r
+\r
+ /**\r
+ * Method deleteHeight\r
+ *\r
+ */\r
+ public void deleteHeight()\r
+ {\r
+ this._has_height = false;\r
+ } //-- void deleteHeight()\r
+\r
+ /**\r
+ * Method deleteMarkUnlinked\r
+ *\r
+ */\r
+ public void deleteMarkUnlinked()\r
+ {\r
+ this._has_markUnlinked = false;\r
+ } //-- void deleteMarkUnlinked()\r
+\r
+ /**\r
+ * Method deleteShowBootstrap\r
+ *\r
+ */\r
+ public void deleteShowBootstrap()\r
+ {\r
+ this._has_showBootstrap = false;\r
+ } //-- void deleteShowBootstrap()\r
+\r
+ /**\r
+ * Method deleteShowDistances\r
+ *\r
+ */\r
+ public void deleteShowDistances()\r
+ {\r
+ this._has_showDistances = false;\r
+ } //-- void deleteShowDistances()\r
+\r
+ /**\r
+ * Method deleteThreshold\r
+ *\r
+ */\r
+ public void deleteThreshold()\r
+ {\r
+ this._has_threshold = false;\r
+ } //-- void deleteThreshold()\r
+\r
+ /**\r
+ * Method deleteWidth\r
+ *\r
+ */\r
+ public void deleteWidth()\r
+ {\r
+ this._has_width = false;\r
+ } //-- void deleteWidth()\r
+\r
+ /**\r
+ * Method deleteXpos\r
+ *\r
+ */\r
+ public void deleteXpos()\r
+ {\r
+ this._has_xpos = false;\r
+ } //-- void deleteXpos()\r
+\r
+ /**\r
+ * Method deleteYpos\r
+ *\r
+ */\r
+ public void deleteYpos()\r
+ {\r
+ this._has_ypos = false;\r
+ } //-- void deleteYpos()\r
+\r
+ /**\r
+ * Returns the value of field 'currentTree'.\r
+ *\r
+ * @return boolean\r
+ * @return the value of field 'currentTree'.\r
+ */\r
+ public boolean getCurrentTree()\r
+ {\r
+ return this._currentTree;\r
+ } //-- boolean getCurrentTree()\r
+\r
+ /**\r
+ * Returns the value of field 'fitToWindow'.\r
+ *\r
+ * @return boolean\r
+ * @return the value of field 'fitToWindow'.\r
+ */\r
+ public boolean getFitToWindow()\r
+ {\r
+ return this._fitToWindow;\r
+ } //-- boolean getFitToWindow()\r
+\r
+ /**\r
+ * Returns the value of field 'fontName'.\r
+ *\r
+ * @return String\r
+ * @return the value of field 'fontName'.\r
+ */\r
+ public java.lang.String getFontName()\r
+ {\r
+ return this._fontName;\r
+ } //-- java.lang.String getFontName()\r
+\r
+ /**\r
+ * Returns the value of field 'fontSize'.\r
+ *\r
+ * @return int\r
+ * @return the value of field 'fontSize'.\r
+ */\r
+ public int getFontSize()\r
+ {\r
+ return this._fontSize;\r
+ } //-- int getFontSize()\r
+\r
+ /**\r
+ * Returns the value of field 'fontStyle'.\r
+ *\r
+ * @return int\r
+ * @return the value of field 'fontStyle'.\r
+ */\r
+ public int getFontStyle()\r
+ {\r
+ return this._fontStyle;\r
+ } //-- int getFontStyle()\r
+\r
+ /**\r
+ * Returns the value of field 'height'.\r
+ *\r
+ * @return int\r
+ * @return the value of field 'height'.\r
+ */\r
+ public int getHeight()\r
+ {\r
+ return this._height;\r
+ } //-- int getHeight()\r
+\r
+ /**\r
+ * Returns the value of field 'markUnlinked'.\r
+ *\r
+ * @return boolean\r
+ * @return the value of field 'markUnlinked'.\r
+ */\r
+ public boolean getMarkUnlinked()\r
+ {\r
+ return this._markUnlinked;\r
+ } //-- boolean getMarkUnlinked()\r
+\r
+ /**\r
+ * Returns the value of field 'newick'.\r
+ *\r
+ * @return String\r
+ * @return the value of field 'newick'.\r
+ */\r
+ public java.lang.String getNewick()\r
+ {\r
+ return this._newick;\r
+ } //-- java.lang.String getNewick()\r
+\r
+ /**\r
+ * Returns the value of field 'showBootstrap'.\r
+ *\r
+ * @return boolean\r
+ * @return the value of field 'showBootstrap'.\r
+ */\r
+ public boolean getShowBootstrap()\r
+ {\r
+ return this._showBootstrap;\r
+ } //-- boolean getShowBootstrap()\r
+\r
+ /**\r
+ * Returns the value of field 'showDistances'.\r
+ *\r
+ * @return boolean\r
+ * @return the value of field 'showDistances'.\r
+ */\r
+ public boolean getShowDistances()\r
+ {\r
+ return this._showDistances;\r
+ } //-- boolean getShowDistances()\r
+\r
+ /**\r
+ * Returns the value of field 'threshold'.\r
+ *\r
+ * @return float\r
+ * @return the value of field 'threshold'.\r
+ */\r
+ public float getThreshold()\r
+ {\r
+ return this._threshold;\r
+ } //-- float getThreshold()\r
+\r
+ /**\r
+ * Returns the value of field 'title'.\r
+ *\r
+ * @return String\r
+ * @return the value of field 'title'.\r
+ */\r
+ public java.lang.String getTitle()\r
+ {\r
+ return this._title;\r
+ } //-- java.lang.String getTitle()\r
+\r
+ /**\r
+ * Returns the value of field 'width'.\r
+ *\r
+ * @return int\r
+ * @return the value of field 'width'.\r
+ */\r
+ public int getWidth()\r
+ {\r
+ return this._width;\r
+ } //-- int getWidth()\r
+\r
+ /**\r
+ * Returns the value of field 'xpos'.\r
+ *\r
+ * @return int\r
+ * @return the value of field 'xpos'.\r
+ */\r
+ public int getXpos()\r
+ {\r
+ return this._xpos;\r
+ } //-- int getXpos()\r
+\r
+ /**\r
+ * Returns the value of field 'ypos'.\r
+ *\r
+ * @return int\r
+ * @return the value of field 'ypos'.\r
+ */\r
+ public int getYpos()\r
+ {\r
+ return this._ypos;\r
+ } //-- int getYpos()\r
+\r
+ /**\r
+ * Method hasCurrentTree\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean hasCurrentTree()\r
+ {\r
+ return this._has_currentTree;\r
+ } //-- boolean hasCurrentTree()\r
+\r
+ /**\r
+ * Method hasFitToWindow\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean hasFitToWindow()\r
+ {\r
+ return this._has_fitToWindow;\r
+ } //-- boolean hasFitToWindow()\r
+\r
+ /**\r
+ * Method hasFontSize\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean hasFontSize()\r
+ {\r
+ return this._has_fontSize;\r
+ } //-- boolean hasFontSize()\r
+\r
+ /**\r
+ * Method hasFontStyle\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean hasFontStyle()\r
+ {\r
+ return this._has_fontStyle;\r
+ } //-- boolean hasFontStyle()\r
+\r
+ /**\r
+ * Method hasHeight\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean hasHeight()\r
+ {\r
+ return this._has_height;\r
+ } //-- boolean hasHeight()\r
+\r
+ /**\r
+ * Method hasMarkUnlinked\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean hasMarkUnlinked()\r
+ {\r
+ return this._has_markUnlinked;\r
+ } //-- boolean hasMarkUnlinked()\r
+\r
+ /**\r
+ * Method hasShowBootstrap\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean hasShowBootstrap()\r
+ {\r
+ return this._has_showBootstrap;\r
+ } //-- boolean hasShowBootstrap()\r
+\r
+ /**\r
+ * Method hasShowDistances\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean hasShowDistances()\r
+ {\r
+ return this._has_showDistances;\r
+ } //-- boolean hasShowDistances()\r
+\r
+ /**\r
+ * Method hasThreshold\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean hasThreshold()\r
+ {\r
+ return this._has_threshold;\r
+ } //-- boolean hasThreshold()\r
+\r
+ /**\r
+ * Method hasWidth\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean hasWidth()\r
+ {\r
+ return this._has_width;\r
+ } //-- boolean hasWidth()\r
+\r
+ /**\r
+ * Method hasXpos\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean hasXpos()\r
+ {\r
+ return this._has_xpos;\r
+ } //-- boolean hasXpos()\r
+\r
+ /**\r
+ * Method hasYpos\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean hasYpos()\r
+ {\r
+ return this._has_ypos;\r
+ } //-- boolean hasYpos()\r
+\r
+ /**\r
+ * Method isValid\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean isValid()\r
+ {\r
+ try\r
+ {\r
+ validate();\r
+ }\r
+ catch (org.exolab.castor.xml.ValidationException vex)\r
+ {\r
+ return false;\r
+ }\r
+ return true;\r
+ } //-- boolean isValid()\r
+\r
+ /**\r
+ * Method marshal\r
+ *\r
+ *\r
+ *\r
+ * @param out\r
+ */\r
+ public void marshal(java.io.Writer out)\r
+ throws org.exolab.castor.xml.MarshalException,\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
+\r
+ Marshaller.marshal(this, out);\r
+ } //-- void marshal(java.io.Writer)\r
+\r
+ /**\r
+ * Method marshal\r
+ *\r
+ *\r
+ *\r
+ * @param handler\r
+ */\r
+ public void marshal(org.xml.sax.ContentHandler handler)\r
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException,\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
+\r
+ Marshaller.marshal(this, handler);\r
+ } //-- void marshal(org.xml.sax.ContentHandler)\r
+\r
+ /**\r
+ * Sets the value of field 'currentTree'.\r
+ *\r
+ * @param currentTree the value of field 'currentTree'.\r
+ */\r
+ public void setCurrentTree(boolean currentTree)\r
+ {\r
+ this._currentTree = currentTree;\r
+ this._has_currentTree = true;\r
+ } //-- void setCurrentTree(boolean)\r
+\r
+ /**\r
+ * Sets the value of field 'fitToWindow'.\r
+ *\r
+ * @param fitToWindow the value of field 'fitToWindow'.\r
+ */\r
+ public void setFitToWindow(boolean fitToWindow)\r
+ {\r
+ this._fitToWindow = fitToWindow;\r
+ this._has_fitToWindow = true;\r
+ } //-- void setFitToWindow(boolean)\r
+\r
+ /**\r
+ * Sets the value of field 'fontName'.\r
+ *\r
+ * @param fontName the value of field 'fontName'.\r
+ */\r
+ public void setFontName(java.lang.String fontName)\r
+ {\r
+ this._fontName = fontName;\r
+ } //-- void setFontName(java.lang.String)\r
+\r
+ /**\r
+ * Sets the value of field 'fontSize'.\r
+ *\r
+ * @param fontSize the value of field 'fontSize'.\r
+ */\r
+ public void setFontSize(int fontSize)\r
+ {\r
+ this._fontSize = fontSize;\r
+ this._has_fontSize = true;\r
+ } //-- void setFontSize(int)\r
+\r
+ /**\r
+ * Sets the value of field 'fontStyle'.\r
+ *\r
+ * @param fontStyle the value of field 'fontStyle'.\r
+ */\r
+ public void setFontStyle(int fontStyle)\r
+ {\r
+ this._fontStyle = fontStyle;\r
+ this._has_fontStyle = true;\r
+ } //-- void setFontStyle(int)\r
+\r
+ /**\r
+ * Sets the value of field 'height'.\r
+ *\r
+ * @param height the value of field 'height'.\r
+ */\r
+ public void setHeight(int height)\r
+ {\r
+ this._height = height;\r
+ this._has_height = true;\r
+ } //-- void setHeight(int)\r
+\r
+ /**\r
+ * Sets the value of field 'markUnlinked'.\r
+ *\r
+ * @param markUnlinked the value of field 'markUnlinked'.\r
+ */\r
+ public void setMarkUnlinked(boolean markUnlinked)\r
+ {\r
+ this._markUnlinked = markUnlinked;\r
+ this._has_markUnlinked = true;\r
+ } //-- void setMarkUnlinked(boolean)\r
+\r
+ /**\r
+ * Sets the value of field 'newick'.\r
+ *\r
+ * @param newick the value of field 'newick'.\r
+ */\r
+ public void setNewick(java.lang.String newick)\r
+ {\r
+ this._newick = newick;\r
+ } //-- void setNewick(java.lang.String)\r
+\r
+ /**\r
+ * Sets the value of field 'showBootstrap'.\r
+ *\r
+ * @param showBootstrap the value of field 'showBootstrap'.\r
+ */\r
+ public void setShowBootstrap(boolean showBootstrap)\r
+ {\r
+ this._showBootstrap = showBootstrap;\r
+ this._has_showBootstrap = true;\r
+ } //-- void setShowBootstrap(boolean)\r
+\r
+ /**\r
+ * Sets the value of field 'showDistances'.\r
+ *\r
+ * @param showDistances the value of field 'showDistances'.\r
+ */\r
+ public void setShowDistances(boolean showDistances)\r
+ {\r
+ this._showDistances = showDistances;\r
+ this._has_showDistances = true;\r
+ } //-- void setShowDistances(boolean)\r
+\r
+ /**\r
+ * Sets the value of field 'threshold'.\r
+ *\r
+ * @param threshold the value of field 'threshold'.\r
+ */\r
+ public void setThreshold(float threshold)\r
+ {\r
+ this._threshold = threshold;\r
+ this._has_threshold = true;\r
+ } //-- void setThreshold(float)\r
+\r
+ /**\r
+ * Sets the value of field 'title'.\r
+ *\r
+ * @param title the value of field 'title'.\r
+ */\r
+ public void setTitle(java.lang.String title)\r
+ {\r
+ this._title = title;\r
+ } //-- void setTitle(java.lang.String)\r
+\r
+ /**\r
+ * Sets the value of field 'width'.\r
+ *\r
+ * @param width the value of field 'width'.\r
+ */\r
+ public void setWidth(int width)\r
+ {\r
+ this._width = width;\r
+ this._has_width = true;\r
+ } //-- void setWidth(int)\r
+\r
+ /**\r
+ * Sets the value of field 'xpos'.\r
+ *\r
+ * @param xpos the value of field 'xpos'.\r
+ */\r
+ public void setXpos(int xpos)\r
+ {\r
+ this._xpos = xpos;\r
+ this._has_xpos = true;\r
+ } //-- void setXpos(int)\r
+\r
+ /**\r
+ * Sets the value of field 'ypos'.\r
+ *\r
+ * @param ypos the value of field 'ypos'.\r
+ */\r
+ public void setYpos(int ypos)\r
+ {\r
+ this._ypos = ypos;\r
+ this._has_ypos = true;\r
+ } //-- void setYpos(int)\r
+\r
+ /**\r
+ * Method unmarshal\r
+ *\r
+ *\r
+ *\r
+ * @param reader\r
+ * @return Object\r
+ */\r
+ public static java.lang.Object unmarshal(java.io.Reader reader)\r
+ throws org.exolab.castor.xml.MarshalException,\r
+ org.exolab.castor.xml.ValidationException\r
+ {\r
+ return (jalview.schemabinding.version2.Tree) Unmarshaller.unmarshal(jalview.\r
+ schemabinding.version2.Tree.class, reader);\r
+ } //-- java.lang.Object unmarshal(java.io.Reader)\r
+\r
+ /**\r
+ * Method validate\r
+ *\r
+ */\r
+ public void validate()\r
+ throws org.exolab.castor.xml.ValidationException\r
+ {\r
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.\r
+ Validator();\r
+ validator.validate(this);\r
+ } //-- void validate()\r
\r
}\r
git://source.jalview.org / jalview.git / blobdiff