Formatting
[jalview.git] / src / jalview / schemabinding / version2 / TreeDescriptor.java
index 5232c12..1b7065e 100755 (executable)
@@ -1,5 +1,5 @@
 /*\r
- * This class was automatically generated with \r
+ * This class was automatically generated with\r
  * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
  * Schema.\r
  * $Id$\r
 \r
 package jalview.schemabinding.version2;\r
 \r
-  //---------------------------------/\r
- //- Imported classes and packages -/\r
+//---------------------------------/\r
+//- Imported classes and packages -/\r
 //---------------------------------/\r
 \r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
 import org.exolab.castor.xml.validators.*;\r
 \r
 /**\r
  * Class TreeDescriptor.\r
- * \r
+ *\r
  * @version $Revision$ $Date$\r
  */\r
-public class TreeDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
-      //--------------------------/\r
-     //- Class/Member Variables -/\r
-    //--------------------------/\r
-\r
-    /**\r
-     * Field nsPrefix\r
-     */\r
-    private java.lang.String nsPrefix;\r
-\r
-    /**\r
-     * Field nsURI\r
-     */\r
-    private java.lang.String nsURI;\r
-\r
-    /**\r
-     * Field xmlName\r
-     */\r
-    private java.lang.String xmlName;\r
-\r
-    /**\r
-     * Field identity\r
-     */\r
-    private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
-      //----------------/\r
-     //- Constructors -/\r
-    //----------------/\r
-\r
-    public TreeDescriptor() {\r
-        super();\r
-        nsURI = "www.jalview.org";\r
-        xmlName = "tree";\r
-        \r
-        //-- set grouping compositor\r
-        setCompositorAsSequence();\r
-        org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;\r
-        org.exolab.castor.xml.XMLFieldHandler              handler        = null;\r
-        org.exolab.castor.xml.FieldValidator               fieldValidator = null;\r
-        //-- initialize attribute descriptors\r
-        \r
-        //-- _width\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_width", "width", org.exolab.castor.xml.NodeType.Attribute);\r
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                Tree target = (Tree) object;\r
-                if(!target.hasWidth())\r
-                    return null;\r
-                return new java.lang.Integer(target.getWidth());\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    Tree target = (Tree) object;\r
-                    // if null, use delete method for optional primitives \r
-                    if (value == null) {\r
-                        target.deleteWidth();\r
-                        return;\r
-                    }\r
-                    target.setWidth( ((java.lang.Integer)value).intValue());\r
-                }\r
-                catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance( java.lang.Object parent ) {\r
-                return null;\r
-            }\r
-        } );\r
-        desc.setHandler(handler);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _width\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        { //-- local scope\r
-            IntegerValidator typeValidator= new IntegerValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _height\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_height", "height", org.exolab.castor.xml.NodeType.Attribute);\r
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                Tree target = (Tree) object;\r
-                if(!target.hasHeight())\r
-                    return null;\r
-                return new java.lang.Integer(target.getHeight());\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    Tree target = (Tree) object;\r
-                    // if null, use delete method for optional primitives \r
-                    if (value == null) {\r
-                        target.deleteHeight();\r
-                        return;\r
-                    }\r
-                    target.setHeight( ((java.lang.Integer)value).intValue());\r
-                }\r
-                catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance( java.lang.Object parent ) {\r
-                return null;\r
-            }\r
-        } );\r
-        desc.setHandler(handler);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _height\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        { //-- local scope\r
-            IntegerValidator typeValidator= new IntegerValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _xpos\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_xpos", "xpos", org.exolab.castor.xml.NodeType.Attribute);\r
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                Tree target = (Tree) object;\r
-                if(!target.hasXpos())\r
-                    return null;\r
-                return new java.lang.Integer(target.getXpos());\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    Tree target = (Tree) object;\r
-                    // if null, use delete method for optional primitives \r
-                    if (value == null) {\r
-                        target.deleteXpos();\r
-                        return;\r
-                    }\r
-                    target.setXpos( ((java.lang.Integer)value).intValue());\r
-                }\r
-                catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance( java.lang.Object parent ) {\r
-                return null;\r
-            }\r
-        } );\r
-        desc.setHandler(handler);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _xpos\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        { //-- local scope\r
-            IntegerValidator typeValidator= new IntegerValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _ypos\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_ypos", "ypos", org.exolab.castor.xml.NodeType.Attribute);\r
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                Tree target = (Tree) object;\r
-                if(!target.hasYpos())\r
-                    return null;\r
-                return new java.lang.Integer(target.getYpos());\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    Tree target = (Tree) object;\r
-                    // if null, use delete method for optional primitives \r
-                    if (value == null) {\r
-                        target.deleteYpos();\r
-                        return;\r
-                    }\r
-                    target.setYpos( ((java.lang.Integer)value).intValue());\r
-                }\r
-                catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance( java.lang.Object parent ) {\r
-                return null;\r
-            }\r
-        } );\r
-        desc.setHandler(handler);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _ypos\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        { //-- local scope\r
-            IntegerValidator typeValidator= new IntegerValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _fontName\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_fontName", "fontName", org.exolab.castor.xml.NodeType.Attribute);\r
-        desc.setImmutable(true);\r
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                Tree target = (Tree) object;\r
-                return target.getFontName();\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    Tree target = (Tree) object;\r
-                    target.setFontName( (java.lang.String) value);\r
-                }\r
-                catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance( java.lang.Object parent ) {\r
-                return null;\r
-            }\r
-        } );\r
-        desc.setHandler(handler);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _fontName\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        { //-- local scope\r
-            StringValidator typeValidator = new StringValidator();\r
-            typeValidator.setWhiteSpace("preserve");\r
-            fieldValidator.setValidator(typeValidator);\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _fontSize\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_fontSize", "fontSize", org.exolab.castor.xml.NodeType.Attribute);\r
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                Tree target = (Tree) object;\r
-                if(!target.hasFontSize())\r
-                    return null;\r
-                return new java.lang.Integer(target.getFontSize());\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    Tree target = (Tree) object;\r
-                    // if null, use delete method for optional primitives \r
-                    if (value == null) {\r
-                        target.deleteFontSize();\r
-                        return;\r
-                    }\r
-                    target.setFontSize( ((java.lang.Integer)value).intValue());\r
-                }\r
-                catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance( java.lang.Object parent ) {\r
-                return null;\r
-            }\r
-        } );\r
-        desc.setHandler(handler);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _fontSize\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        { //-- local scope\r
-            IntegerValidator typeValidator= new IntegerValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _fontStyle\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_fontStyle", "fontStyle", org.exolab.castor.xml.NodeType.Attribute);\r
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                Tree target = (Tree) object;\r
-                if(!target.hasFontStyle())\r
-                    return null;\r
-                return new java.lang.Integer(target.getFontStyle());\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    Tree target = (Tree) object;\r
-                    // if null, use delete method for optional primitives \r
-                    if (value == null) {\r
-                        target.deleteFontStyle();\r
-                        return;\r
-                    }\r
-                    target.setFontStyle( ((java.lang.Integer)value).intValue());\r
-                }\r
-                catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance( java.lang.Object parent ) {\r
-                return null;\r
-            }\r
-        } );\r
-        desc.setHandler(handler);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _fontStyle\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        { //-- local scope\r
-            IntegerValidator typeValidator= new IntegerValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _threshold\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(float.class, "_threshold", "threshold", org.exolab.castor.xml.NodeType.Attribute);\r
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                Tree target = (Tree) object;\r
-                if(!target.hasThreshold())\r
-                    return null;\r
-                return new java.lang.Float(target.getThreshold());\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    Tree target = (Tree) object;\r
-                    // if null, use delete method for optional primitives \r
-                    if (value == null) {\r
-                        target.deleteThreshold();\r
-                        return;\r
-                    }\r
-                    target.setThreshold( ((java.lang.Float)value).floatValue());\r
-                }\r
-                catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance( java.lang.Object parent ) {\r
-                return null;\r
-            }\r
-        } );\r
-        desc.setHandler(handler);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _threshold\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        { //-- local scope\r
-            FloatValidator typeValidator = new FloatValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _showBootstrap\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showBootstrap", "showBootstrap", org.exolab.castor.xml.NodeType.Attribute);\r
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                Tree target = (Tree) object;\r
-                if(!target.hasShowBootstrap())\r
-                    return null;\r
-                return (target.getShowBootstrap() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    Tree target = (Tree) object;\r
-                    // if null, use delete method for optional primitives \r
-                    if (value == null) {\r
-                        target.deleteShowBootstrap();\r
-                        return;\r
-                    }\r
-                    target.setShowBootstrap( ((java.lang.Boolean)value).booleanValue());\r
-                }\r
-                catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance( java.lang.Object parent ) {\r
-                return null;\r
-            }\r
-        } );\r
-        desc.setHandler(handler);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _showBootstrap\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        { //-- local scope\r
-            BooleanValidator typeValidator = new BooleanValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _showDistances\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showDistances", "showDistances", org.exolab.castor.xml.NodeType.Attribute);\r
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                Tree target = (Tree) object;\r
-                if(!target.hasShowDistances())\r
-                    return null;\r
-                return (target.getShowDistances() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    Tree target = (Tree) object;\r
-                    // if null, use delete method for optional primitives \r
-                    if (value == null) {\r
-                        target.deleteShowDistances();\r
-                        return;\r
-                    }\r
-                    target.setShowDistances( ((java.lang.Boolean)value).booleanValue());\r
-                }\r
-                catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance( java.lang.Object parent ) {\r
-                return null;\r
-            }\r
-        } );\r
-        desc.setHandler(handler);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _showDistances\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        { //-- local scope\r
-            BooleanValidator typeValidator = new BooleanValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _markUnlinked\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_markUnlinked", "markUnlinked", org.exolab.castor.xml.NodeType.Attribute);\r
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                Tree target = (Tree) object;\r
-                if(!target.hasMarkUnlinked())\r
-                    return null;\r
-                return (target.getMarkUnlinked() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    Tree target = (Tree) object;\r
-                    // if null, use delete method for optional primitives \r
-                    if (value == null) {\r
-                        target.deleteMarkUnlinked();\r
-                        return;\r
-                    }\r
-                    target.setMarkUnlinked( ((java.lang.Boolean)value).booleanValue());\r
-                }\r
-                catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance( java.lang.Object parent ) {\r
-                return null;\r
-            }\r
-        } );\r
-        desc.setHandler(handler);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _markUnlinked\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        { //-- local scope\r
-            BooleanValidator typeValidator = new BooleanValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _fitToWindow\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_fitToWindow", "fitToWindow", org.exolab.castor.xml.NodeType.Attribute);\r
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                Tree target = (Tree) object;\r
-                if(!target.hasFitToWindow())\r
-                    return null;\r
-                return (target.getFitToWindow() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    Tree target = (Tree) object;\r
-                    // if null, use delete method for optional primitives \r
-                    if (value == null) {\r
-                        target.deleteFitToWindow();\r
-                        return;\r
-                    }\r
-                    target.setFitToWindow( ((java.lang.Boolean)value).booleanValue());\r
-                }\r
-                catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance( java.lang.Object parent ) {\r
-                return null;\r
-            }\r
-        } );\r
-        desc.setHandler(handler);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _fitToWindow\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        { //-- local scope\r
-            BooleanValidator typeValidator = new BooleanValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _currentTree\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_currentTree", "currentTree", org.exolab.castor.xml.NodeType.Attribute);\r
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                Tree target = (Tree) object;\r
-                if(!target.hasCurrentTree())\r
-                    return null;\r
-                return (target.getCurrentTree() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    Tree target = (Tree) object;\r
-                    // if null, use delete method for optional primitives \r
-                    if (value == null) {\r
-                        target.deleteCurrentTree();\r
-                        return;\r
-                    }\r
-                    target.setCurrentTree( ((java.lang.Boolean)value).booleanValue());\r
-                }\r
-                catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance( java.lang.Object parent ) {\r
-                return null;\r
-            }\r
-        } );\r
-        desc.setHandler(handler);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _currentTree\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        { //-- local scope\r
-            BooleanValidator typeValidator = new BooleanValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- initialize element descriptors\r
-        \r
-        //-- _title\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_title", "title", org.exolab.castor.xml.NodeType.Element);\r
-        desc.setImmutable(true);\r
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                Tree target = (Tree) object;\r
-                return target.getTitle();\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    Tree target = (Tree) object;\r
-                    target.setTitle( (java.lang.String) value);\r
-                }\r
-                catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance( java.lang.Object parent ) {\r
-                return null;\r
-            }\r
-        } );\r
-        desc.setHandler(handler);\r
-        desc.setNameSpaceURI("www.jalview.org");\r
-        desc.setMultivalued(false);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _title\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        { //-- local scope\r
-            StringValidator typeValidator = new StringValidator();\r
-            typeValidator.setWhiteSpace("preserve");\r
-            fieldValidator.setValidator(typeValidator);\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _newick\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_newick", "newick", org.exolab.castor.xml.NodeType.Element);\r
-        desc.setImmutable(true);\r
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                Tree target = (Tree) object;\r
-                return target.getNewick();\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    Tree target = (Tree) object;\r
-                    target.setNewick( (java.lang.String) value);\r
-                }\r
-                catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance( java.lang.Object parent ) {\r
-                return null;\r
-            }\r
-        } );\r
-        desc.setHandler(handler);\r
-        desc.setNameSpaceURI("www.jalview.org");\r
-        desc.setMultivalued(false);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _newick\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        { //-- local scope\r
-            StringValidator typeValidator = new StringValidator();\r
-            typeValidator.setWhiteSpace("preserve");\r
-            fieldValidator.setValidator(typeValidator);\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-    } //-- jalview.schemabinding.version2.TreeDescriptor()\r
-\r
-\r
-      //-----------/\r
-     //- Methods -/\r
-    //-----------/\r
-\r
-    /**\r
-     * Method getAccessMode\r
-     * \r
-     * \r
-     * \r
-     * @return AccessMode\r
-     */\r
-    public org.exolab.castor.mapping.AccessMode getAccessMode()\r
+public class TreeDescriptor\r
+    extends org.exolab.castor.xml.util.XMLClassDescriptorImpl\r
+{\r
+\r
+  //--------------------------/\r
+  //- Class/Member Variables -/\r
+  //--------------------------/\r
+\r
+  /**\r
+   * Field nsPrefix\r
+   */\r
+  private java.lang.String nsPrefix;\r
+\r
+  /**\r
+   * Field nsURI\r
+   */\r
+  private java.lang.String nsURI;\r
+\r
+  /**\r
+   * Field xmlName\r
+   */\r
+  private java.lang.String xmlName;\r
+\r
+  /**\r
+   * Field identity\r
+   */\r
+  private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
+\r
+  //----------------/\r
+  //- Constructors -/\r
+  //----------------/\r
+\r
+  public TreeDescriptor()\r
+  {\r
+    super();\r
+    nsURI = "www.jalview.org";\r
+    xmlName = "tree";\r
+\r
+    //-- set grouping compositor\r
+    setCompositorAsSequence();\r
+    org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
+    org.exolab.castor.xml.XMLFieldHandler handler = null;\r
+    org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
+    //-- initialize attribute descriptors\r
+\r
+    //-- _width\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
+        Integer.TYPE, "_width", "width",\r
+        org.exolab.castor.xml.NodeType.Attribute);\r
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
+    {\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException\r
+      {\r
+        Tree target = (Tree) object;\r
+        if (!target.hasWidth())\r
+        {\r
+          return null;\r
+        }\r
+        return new java.lang.Integer(target.getWidth());\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException\r
+      {\r
+        try\r
+        {\r
+          Tree target = (Tree) object;\r
+          // if null, use delete method for optional primitives\r
+          if (value == null)\r
+          {\r
+            target.deleteWidth();\r
+            return;\r
+          }\r
+          target.setWidth( ( (java.lang.Integer) value).intValue());\r
+        }\r
+        catch (java.lang.Exception ex)\r
+        {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent)\r
+      {\r
+        return null;\r
+      }\r
+    });\r
+    desc.setHandler(handler);\r
+    addFieldDescriptor(desc);\r
+\r
+    //-- validation code for: _width\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    { //-- local scope\r
+      IntegerValidator typeValidator = new IntegerValidator();\r
+      fieldValidator.setValidator(typeValidator);\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    //-- _height\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
+        Integer.TYPE, "_height", "height",\r
+        org.exolab.castor.xml.NodeType.Attribute);\r
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
     {\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException\r
+      {\r
+        Tree target = (Tree) object;\r
+        if (!target.hasHeight())\r
+        {\r
+          return null;\r
+        }\r
+        return new java.lang.Integer(target.getHeight());\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException\r
+      {\r
+        try\r
+        {\r
+          Tree target = (Tree) object;\r
+          // if null, use delete method for optional primitives\r
+          if (value == null)\r
+          {\r
+            target.deleteHeight();\r
+            return;\r
+          }\r
+          target.setHeight( ( (java.lang.Integer) value).intValue());\r
+        }\r
+        catch (java.lang.Exception ex)\r
+        {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent)\r
+      {\r
         return null;\r
-    } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
-    /**\r
-     * Method getExtends\r
-     * \r
-     * \r
-     * \r
-     * @return ClassDescriptor\r
-     */\r
-    public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
+      }\r
+    });\r
+    desc.setHandler(handler);\r
+    addFieldDescriptor(desc);\r
+\r
+    //-- validation code for: _height\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    { //-- local scope\r
+      IntegerValidator typeValidator = new IntegerValidator();\r
+      fieldValidator.setValidator(typeValidator);\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    //-- _xpos\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
+        Integer.TYPE, "_xpos", "xpos", org.exolab.castor.xml.NodeType.Attribute);\r
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
     {\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException\r
+      {\r
+        Tree target = (Tree) object;\r
+        if (!target.hasXpos())\r
+        {\r
+          return null;\r
+        }\r
+        return new java.lang.Integer(target.getXpos());\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException\r
+      {\r
+        try\r
+        {\r
+          Tree target = (Tree) object;\r
+          // if null, use delete method for optional primitives\r
+          if (value == null)\r
+          {\r
+            target.deleteXpos();\r
+            return;\r
+          }\r
+          target.setXpos( ( (java.lang.Integer) value).intValue());\r
+        }\r
+        catch (java.lang.Exception ex)\r
+        {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent)\r
+      {\r
         return null;\r
-    } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
-    /**\r
-     * Method getIdentity\r
-     * \r
-     * \r
-     * \r
-     * @return FieldDescriptor\r
-     */\r
-    public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
+      }\r
+    });\r
+    desc.setHandler(handler);\r
+    addFieldDescriptor(desc);\r
+\r
+    //-- validation code for: _xpos\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    { //-- local scope\r
+      IntegerValidator typeValidator = new IntegerValidator();\r
+      fieldValidator.setValidator(typeValidator);\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    //-- _ypos\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
+        Integer.TYPE, "_ypos", "ypos", org.exolab.castor.xml.NodeType.Attribute);\r
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
     {\r
-        return identity;\r
-    } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
-    /**\r
-     * Method getJavaClass\r
-     * \r
-     * \r
-     * \r
-     * @return Class\r
-     */\r
-    public java.lang.Class getJavaClass()\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException\r
+      {\r
+        Tree target = (Tree) object;\r
+        if (!target.hasYpos())\r
+        {\r
+          return null;\r
+        }\r
+        return new java.lang.Integer(target.getYpos());\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException\r
+      {\r
+        try\r
+        {\r
+          Tree target = (Tree) object;\r
+          // if null, use delete method for optional primitives\r
+          if (value == null)\r
+          {\r
+            target.deleteYpos();\r
+            return;\r
+          }\r
+          target.setYpos( ( (java.lang.Integer) value).intValue());\r
+        }\r
+        catch (java.lang.Exception ex)\r
+        {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent)\r
+      {\r
+        return null;\r
+      }\r
+    });\r
+    desc.setHandler(handler);\r
+    addFieldDescriptor(desc);\r
+\r
+    //-- validation code for: _ypos\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    { //-- local scope\r
+      IntegerValidator typeValidator = new IntegerValidator();\r
+      fieldValidator.setValidator(typeValidator);\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    //-- _fontName\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
+        String.class, "_fontName", "fontName",\r
+        org.exolab.castor.xml.NodeType.Attribute);\r
+    desc.setImmutable(true);\r
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
     {\r
-        return jalview.schemabinding.version2.Tree.class;\r
-    } //-- java.lang.Class getJavaClass() \r
-\r
-    /**\r
-     * Method getNameSpacePrefix\r
-     * \r
-     * \r
-     * \r
-     * @return String\r
-     */\r
-    public java.lang.String getNameSpacePrefix()\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException\r
+      {\r
+        Tree target = (Tree) object;\r
+        return target.getFontName();\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException\r
+      {\r
+        try\r
+        {\r
+          Tree target = (Tree) object;\r
+          target.setFontName( (java.lang.String) value);\r
+        }\r
+        catch (java.lang.Exception ex)\r
+        {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent)\r
+      {\r
+        return null;\r
+      }\r
+    });\r
+    desc.setHandler(handler);\r
+    addFieldDescriptor(desc);\r
+\r
+    //-- validation code for: _fontName\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    { //-- local scope\r
+      StringValidator typeValidator = new StringValidator();\r
+      typeValidator.setWhiteSpace("preserve");\r
+      fieldValidator.setValidator(typeValidator);\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    //-- _fontSize\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
+        Integer.TYPE, "_fontSize", "fontSize",\r
+        org.exolab.castor.xml.NodeType.Attribute);\r
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
     {\r
-        return nsPrefix;\r
-    } //-- java.lang.String getNameSpacePrefix() \r
-\r
-    /**\r
-     * Method getNameSpaceURI\r
-     * \r
-     * \r
-     * \r
-     * @return String\r
-     */\r
-    public java.lang.String getNameSpaceURI()\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException\r
+      {\r
+        Tree target = (Tree) object;\r
+        if (!target.hasFontSize())\r
+        {\r
+          return null;\r
+        }\r
+        return new java.lang.Integer(target.getFontSize());\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException\r
+      {\r
+        try\r
+        {\r
+          Tree target = (Tree) object;\r
+          // if null, use delete method for optional primitives\r
+          if (value == null)\r
+          {\r
+            target.deleteFontSize();\r
+            return;\r
+          }\r
+          target.setFontSize( ( (java.lang.Integer) value).intValue());\r
+        }\r
+        catch (java.lang.Exception ex)\r
+        {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent)\r
+      {\r
+        return null;\r
+      }\r
+    });\r
+    desc.setHandler(handler);\r
+    addFieldDescriptor(desc);\r
+\r
+    //-- validation code for: _fontSize\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    { //-- local scope\r
+      IntegerValidator typeValidator = new IntegerValidator();\r
+      fieldValidator.setValidator(typeValidator);\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    //-- _fontStyle\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
+        Integer.TYPE, "_fontStyle", "fontStyle",\r
+        org.exolab.castor.xml.NodeType.Attribute);\r
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
     {\r
-        return nsURI;\r
-    } //-- java.lang.String getNameSpaceURI() \r
-\r
-    /**\r
-     * Method getValidator\r
-     * \r
-     * \r
-     * \r
-     * @return TypeValidator\r
-     */\r
-    public org.exolab.castor.xml.TypeValidator getValidator()\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException\r
+      {\r
+        Tree target = (Tree) object;\r
+        if (!target.hasFontStyle())\r
+        {\r
+          return null;\r
+        }\r
+        return new java.lang.Integer(target.getFontStyle());\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException\r
+      {\r
+        try\r
+        {\r
+          Tree target = (Tree) object;\r
+          // if null, use delete method for optional primitives\r
+          if (value == null)\r
+          {\r
+            target.deleteFontStyle();\r
+            return;\r
+          }\r
+          target.setFontStyle( ( (java.lang.Integer) value).intValue());\r
+        }\r
+        catch (java.lang.Exception ex)\r
+        {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent)\r
+      {\r
+        return null;\r
+      }\r
+    });\r
+    desc.setHandler(handler);\r
+    addFieldDescriptor(desc);\r
+\r
+    //-- validation code for: _fontStyle\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    { //-- local scope\r
+      IntegerValidator typeValidator = new IntegerValidator();\r
+      fieldValidator.setValidator(typeValidator);\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    //-- _threshold\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(float.class,\r
+        "_threshold", "threshold", org.exolab.castor.xml.NodeType.Attribute);\r
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
     {\r
-        return this;\r
-    } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
-    /**\r
-     * Method getXMLName\r
-     * \r
-     * \r
-     * \r
-     * @return String\r
-     */\r
-    public java.lang.String getXMLName()\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException\r
+      {\r
+        Tree target = (Tree) object;\r
+        if (!target.hasThreshold())\r
+        {\r
+          return null;\r
+        }\r
+        return new java.lang.Float(target.getThreshold());\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException\r
+      {\r
+        try\r
+        {\r
+          Tree target = (Tree) object;\r
+          // if null, use delete method for optional primitives\r
+          if (value == null)\r
+          {\r
+            target.deleteThreshold();\r
+            return;\r
+          }\r
+          target.setThreshold( ( (java.lang.Float) value).floatValue());\r
+        }\r
+        catch (java.lang.Exception ex)\r
+        {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent)\r
+      {\r
+        return null;\r
+      }\r
+    });\r
+    desc.setHandler(handler);\r
+    addFieldDescriptor(desc);\r
+\r
+    //-- validation code for: _threshold\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    { //-- local scope\r
+      FloatValidator typeValidator = new FloatValidator();\r
+      fieldValidator.setValidator(typeValidator);\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    //-- _showBootstrap\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
+        Boolean.TYPE, "_showBootstrap", "showBootstrap",\r
+        org.exolab.castor.xml.NodeType.Attribute);\r
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
     {\r
-        return xmlName;\r
-    } //-- java.lang.String getXMLName() \r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException\r
+      {\r
+        Tree target = (Tree) object;\r
+        if (!target.hasShowBootstrap())\r
+        {\r
+          return null;\r
+        }\r
+        return (target.getShowBootstrap() ? java.lang.Boolean.TRUE :\r
+                java.lang.Boolean.FALSE);\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException\r
+      {\r
+        try\r
+        {\r
+          Tree target = (Tree) object;\r
+          // if null, use delete method for optional primitives\r
+          if (value == null)\r
+          {\r
+            target.deleteShowBootstrap();\r
+            return;\r
+          }\r
+          target.setShowBootstrap( ( (java.lang.Boolean) value).booleanValue());\r
+        }\r
+        catch (java.lang.Exception ex)\r
+        {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent)\r
+      {\r
+        return null;\r
+      }\r
+    });\r
+    desc.setHandler(handler);\r
+    addFieldDescriptor(desc);\r
+\r
+    //-- validation code for: _showBootstrap\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    { //-- local scope\r
+      BooleanValidator typeValidator = new BooleanValidator();\r
+      fieldValidator.setValidator(typeValidator);\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    //-- _showDistances\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
+        Boolean.TYPE, "_showDistances", "showDistances",\r
+        org.exolab.castor.xml.NodeType.Attribute);\r
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
+    {\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException\r
+      {\r
+        Tree target = (Tree) object;\r
+        if (!target.hasShowDistances())\r
+        {\r
+          return null;\r
+        }\r
+        return (target.getShowDistances() ? java.lang.Boolean.TRUE :\r
+                java.lang.Boolean.FALSE);\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException\r
+      {\r
+        try\r
+        {\r
+          Tree target = (Tree) object;\r
+          // if null, use delete method for optional primitives\r
+          if (value == null)\r
+          {\r
+            target.deleteShowDistances();\r
+            return;\r
+          }\r
+          target.setShowDistances( ( (java.lang.Boolean) value).booleanValue());\r
+        }\r
+        catch (java.lang.Exception ex)\r
+        {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent)\r
+      {\r
+        return null;\r
+      }\r
+    });\r
+    desc.setHandler(handler);\r
+    addFieldDescriptor(desc);\r
+\r
+    //-- validation code for: _showDistances\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    { //-- local scope\r
+      BooleanValidator typeValidator = new BooleanValidator();\r
+      fieldValidator.setValidator(typeValidator);\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    //-- _markUnlinked\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
+        Boolean.TYPE, "_markUnlinked", "markUnlinked",\r
+        org.exolab.castor.xml.NodeType.Attribute);\r
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
+    {\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException\r
+      {\r
+        Tree target = (Tree) object;\r
+        if (!target.hasMarkUnlinked())\r
+        {\r
+          return null;\r
+        }\r
+        return (target.getMarkUnlinked() ? java.lang.Boolean.TRUE :\r
+                java.lang.Boolean.FALSE);\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException\r
+      {\r
+        try\r
+        {\r
+          Tree target = (Tree) object;\r
+          // if null, use delete method for optional primitives\r
+          if (value == null)\r
+          {\r
+            target.deleteMarkUnlinked();\r
+            return;\r
+          }\r
+          target.setMarkUnlinked( ( (java.lang.Boolean) value).booleanValue());\r
+        }\r
+        catch (java.lang.Exception ex)\r
+        {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent)\r
+      {\r
+        return null;\r
+      }\r
+    });\r
+    desc.setHandler(handler);\r
+    addFieldDescriptor(desc);\r
+\r
+    //-- validation code for: _markUnlinked\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    { //-- local scope\r
+      BooleanValidator typeValidator = new BooleanValidator();\r
+      fieldValidator.setValidator(typeValidator);\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    //-- _fitToWindow\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
+        Boolean.TYPE, "_fitToWindow", "fitToWindow",\r
+        org.exolab.castor.xml.NodeType.Attribute);\r
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
+    {\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException\r
+      {\r
+        Tree target = (Tree) object;\r
+        if (!target.hasFitToWindow())\r
+        {\r
+          return null;\r
+        }\r
+        return (target.getFitToWindow() ? java.lang.Boolean.TRUE :\r
+                java.lang.Boolean.FALSE);\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException\r
+      {\r
+        try\r
+        {\r
+          Tree target = (Tree) object;\r
+          // if null, use delete method for optional primitives\r
+          if (value == null)\r
+          {\r
+            target.deleteFitToWindow();\r
+            return;\r
+          }\r
+          target.setFitToWindow( ( (java.lang.Boolean) value).booleanValue());\r
+        }\r
+        catch (java.lang.Exception ex)\r
+        {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent)\r
+      {\r
+        return null;\r
+      }\r
+    });\r
+    desc.setHandler(handler);\r
+    addFieldDescriptor(desc);\r
+\r
+    //-- validation code for: _fitToWindow\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    { //-- local scope\r
+      BooleanValidator typeValidator = new BooleanValidator();\r
+      fieldValidator.setValidator(typeValidator);\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    //-- _currentTree\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
+        Boolean.TYPE, "_currentTree", "currentTree",\r
+        org.exolab.castor.xml.NodeType.Attribute);\r
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
+    {\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException\r
+      {\r
+        Tree target = (Tree) object;\r
+        if (!target.hasCurrentTree())\r
+        {\r
+          return null;\r
+        }\r
+        return (target.getCurrentTree() ? java.lang.Boolean.TRUE :\r
+                java.lang.Boolean.FALSE);\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException\r
+      {\r
+        try\r
+        {\r
+          Tree target = (Tree) object;\r
+          // if null, use delete method for optional primitives\r
+          if (value == null)\r
+          {\r
+            target.deleteCurrentTree();\r
+            return;\r
+          }\r
+          target.setCurrentTree( ( (java.lang.Boolean) value).booleanValue());\r
+        }\r
+        catch (java.lang.Exception ex)\r
+        {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent)\r
+      {\r
+        return null;\r
+      }\r
+    });\r
+    desc.setHandler(handler);\r
+    addFieldDescriptor(desc);\r
+\r
+    //-- validation code for: _currentTree\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    { //-- local scope\r
+      BooleanValidator typeValidator = new BooleanValidator();\r
+      fieldValidator.setValidator(typeValidator);\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    //-- initialize element descriptors\r
+\r
+    //-- _title\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
+        String.class, "_title", "title", org.exolab.castor.xml.NodeType.Element);\r
+    desc.setImmutable(true);\r
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
+    {\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException\r
+      {\r
+        Tree target = (Tree) object;\r
+        return target.getTitle();\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException\r
+      {\r
+        try\r
+        {\r
+          Tree target = (Tree) object;\r
+          target.setTitle( (java.lang.String) value);\r
+        }\r
+        catch (java.lang.Exception ex)\r
+        {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent)\r
+      {\r
+        return null;\r
+      }\r
+    });\r
+    desc.setHandler(handler);\r
+    desc.setNameSpaceURI("www.jalview.org");\r
+    desc.setMultivalued(false);\r
+    addFieldDescriptor(desc);\r
+\r
+    //-- validation code for: _title\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    { //-- local scope\r
+      StringValidator typeValidator = new StringValidator();\r
+      typeValidator.setWhiteSpace("preserve");\r
+      fieldValidator.setValidator(typeValidator);\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+    //-- _newick\r
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
+        String.class, "_newick", "newick",\r
+        org.exolab.castor.xml.NodeType.Element);\r
+    desc.setImmutable(true);\r
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
+    {\r
+      public java.lang.Object getValue(java.lang.Object object)\r
+          throws IllegalStateException\r
+      {\r
+        Tree target = (Tree) object;\r
+        return target.getNewick();\r
+      }\r
+\r
+      public void setValue(java.lang.Object object, java.lang.Object value)\r
+          throws IllegalStateException, IllegalArgumentException\r
+      {\r
+        try\r
+        {\r
+          Tree target = (Tree) object;\r
+          target.setNewick( (java.lang.String) value);\r
+        }\r
+        catch (java.lang.Exception ex)\r
+        {\r
+          throw new IllegalStateException(ex.toString());\r
+        }\r
+      }\r
+\r
+      public java.lang.Object newInstance(java.lang.Object parent)\r
+      {\r
+        return null;\r
+      }\r
+    });\r
+    desc.setHandler(handler);\r
+    desc.setNameSpaceURI("www.jalview.org");\r
+    desc.setMultivalued(false);\r
+    addFieldDescriptor(desc);\r
+\r
+    //-- validation code for: _newick\r
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+    { //-- local scope\r
+      StringValidator typeValidator = new StringValidator();\r
+      typeValidator.setWhiteSpace("preserve");\r
+      fieldValidator.setValidator(typeValidator);\r
+    }\r
+    desc.setValidator(fieldValidator);\r
+  } //-- jalview.schemabinding.version2.TreeDescriptor()\r
+\r
+  //-----------/\r
+  //- Methods -/\r
+  //-----------/\r
+\r
+  /**\r
+   * Method getAccessMode\r
+   *\r
+   *\r
+   *\r
+   * @return AccessMode\r
+   */\r
+  public org.exolab.castor.mapping.AccessMode getAccessMode()\r
+  {\r
+    return null;\r
+  } //-- org.exolab.castor.mapping.AccessMode getAccessMode()\r
+\r
+  /**\r
+   * Method getExtends\r
+   *\r
+   *\r
+   *\r
+   * @return ClassDescriptor\r
+   */\r
+  public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
+  {\r
+    return null;\r
+  } //-- org.exolab.castor.mapping.ClassDescriptor getExtends()\r
+\r
+  /**\r
+   * Method getIdentity\r
+   *\r
+   *\r
+   *\r
+   * @return FieldDescriptor\r
+   */\r
+  public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
+  {\r
+    return identity;\r
+  } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
+\r
+  /**\r
+   * Method getJavaClass\r
+   *\r
+   *\r
+   *\r
+   * @return Class\r
+   */\r
+  public java.lang.Class getJavaClass()\r
+  {\r
+    return jalview.schemabinding.version2.Tree.class;\r
+  } //-- java.lang.Class getJavaClass()\r
+\r
+  /**\r
+   * Method getNameSpacePrefix\r
+   *\r
+   *\r
+   *\r
+   * @return String\r
+   */\r
+  public java.lang.String getNameSpacePrefix()\r
+  {\r
+    return nsPrefix;\r
+  } //-- java.lang.String getNameSpacePrefix()\r
+\r
+  /**\r
+   * Method getNameSpaceURI\r
+   *\r
+   *\r
+   *\r
+   * @return String\r
+   */\r
+  public java.lang.String getNameSpaceURI()\r
+  {\r
+    return nsURI;\r
+  } //-- java.lang.String getNameSpaceURI()\r
+\r
+  /**\r
+   * Method getValidator\r
+   *\r
+   *\r
+   *\r
+   * @return TypeValidator\r
+   */\r
+  public org.exolab.castor.xml.TypeValidator getValidator()\r
+  {\r
+    return this;\r
+  } //-- org.exolab.castor.xml.TypeValidator getValidator()\r
+\r
+  /**\r
+   * Method getXMLName\r
+   *\r
+   *\r
+   *\r
+   * @return String\r
+   */\r
+  public java.lang.String getXMLName()\r
+  {\r
+    return xmlName;\r
+  } //-- java.lang.String getXMLName()\r
 \r
 }\r