Saves Jmol status
[jalview.git] / src / jalview / schemabinding / version2 / TreeDescriptor.java
index 1b7065e..5232c12 100755 (executable)
@@ -1,5 +1,5 @@
 /*\r
- * This class was automatically generated with\r
+ * This class was automatically generated with \r
  * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
  * Schema.\r
  * $Id$\r
 \r
 package jalview.schemabinding.version2;\r
 \r
-//---------------------------------/\r
-//- Imported classes and packages -/\r
+  //---------------------------------/\r
+ //- Imported classes and packages -/\r
 //---------------------------------/\r
 \r
+import org.exolab.castor.mapping.AccessMode;\r
+import org.exolab.castor.xml.TypeValidator;\r
+import org.exolab.castor.xml.XMLFieldDescriptor;\r
 import org.exolab.castor.xml.validators.*;\r
 \r
 /**\r
  * Class TreeDescriptor.\r
- *\r
+ * \r
  * @version $Revision$ $Date$\r
  */\r
-public class TreeDescriptor\r
-    extends org.exolab.castor.xml.util.XMLClassDescriptorImpl\r
-{\r
-\r
-  //--------------------------/\r
-  //- Class/Member Variables -/\r
-  //--------------------------/\r
-\r
-  /**\r
-   * Field nsPrefix\r
-   */\r
-  private java.lang.String nsPrefix;\r
-\r
-  /**\r
-   * Field nsURI\r
-   */\r
-  private java.lang.String nsURI;\r
-\r
-  /**\r
-   * Field xmlName\r
-   */\r
-  private java.lang.String xmlName;\r
-\r
-  /**\r
-   * Field identity\r
-   */\r
-  private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-  //----------------/\r
-  //- Constructors -/\r
-  //----------------/\r
-\r
-  public TreeDescriptor()\r
-  {\r
-    super();\r
-    nsURI = "www.jalview.org";\r
-    xmlName = "tree";\r
-\r
-    //-- set grouping compositor\r
-    setCompositorAsSequence();\r
-    org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
-    org.exolab.castor.xml.XMLFieldHandler handler = null;\r
-    org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
-    //-- initialize attribute descriptors\r
-\r
-    //-- _width\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
-        Integer.TYPE, "_width", "width",\r
-        org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-          throws IllegalStateException\r
-      {\r
-        Tree target = (Tree) object;\r
-        if (!target.hasWidth())\r
-        {\r
-          return null;\r
-        }\r
-        return new java.lang.Integer(target.getWidth());\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-          throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          Tree target = (Tree) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteWidth();\r
-            return;\r
-          }\r
-          target.setWidth( ( (java.lang.Integer) value).intValue());\r
-        }\r
-        catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    });\r
-    desc.setHandler(handler);\r
-    addFieldDescriptor(desc);\r
-\r
-    //-- validation code for: _width\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { //-- local scope\r
-      IntegerValidator typeValidator = new IntegerValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    //-- _height\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
-        Integer.TYPE, "_height", "height",\r
-        org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
+public class TreeDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
+\r
+\r
+      //--------------------------/\r
+     //- Class/Member Variables -/\r
+    //--------------------------/\r
+\r
+    /**\r
+     * Field nsPrefix\r
+     */\r
+    private java.lang.String nsPrefix;\r
+\r
+    /**\r
+     * Field nsURI\r
+     */\r
+    private java.lang.String nsURI;\r
+\r
+    /**\r
+     * Field xmlName\r
+     */\r
+    private java.lang.String xmlName;\r
+\r
+    /**\r
+     * Field identity\r
+     */\r
+    private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
+\r
+\r
+      //----------------/\r
+     //- Constructors -/\r
+    //----------------/\r
+\r
+    public TreeDescriptor() {\r
+        super();\r
+        nsURI = "www.jalview.org";\r
+        xmlName = "tree";\r
+        \r
+        //-- set grouping compositor\r
+        setCompositorAsSequence();\r
+        org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;\r
+        org.exolab.castor.xml.XMLFieldHandler              handler        = null;\r
+        org.exolab.castor.xml.FieldValidator               fieldValidator = null;\r
+        //-- initialize attribute descriptors\r
+        \r
+        //-- _width\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_width", "width", org.exolab.castor.xml.NodeType.Attribute);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Tree target = (Tree) object;\r
+                if(!target.hasWidth())\r
+                    return null;\r
+                return new java.lang.Integer(target.getWidth());\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Tree target = (Tree) object;\r
+                    // if null, use delete method for optional primitives \r
+                    if (value == null) {\r
+                        target.deleteWidth();\r
+                        return;\r
+                    }\r
+                    target.setWidth( ((java.lang.Integer)value).intValue());\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _width\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            IntegerValidator typeValidator= new IntegerValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _height\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_height", "height", org.exolab.castor.xml.NodeType.Attribute);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Tree target = (Tree) object;\r
+                if(!target.hasHeight())\r
+                    return null;\r
+                return new java.lang.Integer(target.getHeight());\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Tree target = (Tree) object;\r
+                    // if null, use delete method for optional primitives \r
+                    if (value == null) {\r
+                        target.deleteHeight();\r
+                        return;\r
+                    }\r
+                    target.setHeight( ((java.lang.Integer)value).intValue());\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _height\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            IntegerValidator typeValidator= new IntegerValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _xpos\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_xpos", "xpos", org.exolab.castor.xml.NodeType.Attribute);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Tree target = (Tree) object;\r
+                if(!target.hasXpos())\r
+                    return null;\r
+                return new java.lang.Integer(target.getXpos());\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Tree target = (Tree) object;\r
+                    // if null, use delete method for optional primitives \r
+                    if (value == null) {\r
+                        target.deleteXpos();\r
+                        return;\r
+                    }\r
+                    target.setXpos( ((java.lang.Integer)value).intValue());\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _xpos\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            IntegerValidator typeValidator= new IntegerValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _ypos\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_ypos", "ypos", org.exolab.castor.xml.NodeType.Attribute);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Tree target = (Tree) object;\r
+                if(!target.hasYpos())\r
+                    return null;\r
+                return new java.lang.Integer(target.getYpos());\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Tree target = (Tree) object;\r
+                    // if null, use delete method for optional primitives \r
+                    if (value == null) {\r
+                        target.deleteYpos();\r
+                        return;\r
+                    }\r
+                    target.setYpos( ((java.lang.Integer)value).intValue());\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _ypos\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            IntegerValidator typeValidator= new IntegerValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _fontName\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_fontName", "fontName", org.exolab.castor.xml.NodeType.Attribute);\r
+        desc.setImmutable(true);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Tree target = (Tree) object;\r
+                return target.getFontName();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Tree target = (Tree) object;\r
+                    target.setFontName( (java.lang.String) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _fontName\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            StringValidator typeValidator = new StringValidator();\r
+            typeValidator.setWhiteSpace("preserve");\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _fontSize\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_fontSize", "fontSize", org.exolab.castor.xml.NodeType.Attribute);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Tree target = (Tree) object;\r
+                if(!target.hasFontSize())\r
+                    return null;\r
+                return new java.lang.Integer(target.getFontSize());\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Tree target = (Tree) object;\r
+                    // if null, use delete method for optional primitives \r
+                    if (value == null) {\r
+                        target.deleteFontSize();\r
+                        return;\r
+                    }\r
+                    target.setFontSize( ((java.lang.Integer)value).intValue());\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _fontSize\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            IntegerValidator typeValidator= new IntegerValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _fontStyle\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_fontStyle", "fontStyle", org.exolab.castor.xml.NodeType.Attribute);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Tree target = (Tree) object;\r
+                if(!target.hasFontStyle())\r
+                    return null;\r
+                return new java.lang.Integer(target.getFontStyle());\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Tree target = (Tree) object;\r
+                    // if null, use delete method for optional primitives \r
+                    if (value == null) {\r
+                        target.deleteFontStyle();\r
+                        return;\r
+                    }\r
+                    target.setFontStyle( ((java.lang.Integer)value).intValue());\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _fontStyle\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            IntegerValidator typeValidator= new IntegerValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _threshold\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(float.class, "_threshold", "threshold", org.exolab.castor.xml.NodeType.Attribute);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Tree target = (Tree) object;\r
+                if(!target.hasThreshold())\r
+                    return null;\r
+                return new java.lang.Float(target.getThreshold());\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Tree target = (Tree) object;\r
+                    // if null, use delete method for optional primitives \r
+                    if (value == null) {\r
+                        target.deleteThreshold();\r
+                        return;\r
+                    }\r
+                    target.setThreshold( ((java.lang.Float)value).floatValue());\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _threshold\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            FloatValidator typeValidator = new FloatValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _showBootstrap\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showBootstrap", "showBootstrap", org.exolab.castor.xml.NodeType.Attribute);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Tree target = (Tree) object;\r
+                if(!target.hasShowBootstrap())\r
+                    return null;\r
+                return (target.getShowBootstrap() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Tree target = (Tree) object;\r
+                    // if null, use delete method for optional primitives \r
+                    if (value == null) {\r
+                        target.deleteShowBootstrap();\r
+                        return;\r
+                    }\r
+                    target.setShowBootstrap( ((java.lang.Boolean)value).booleanValue());\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _showBootstrap\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            BooleanValidator typeValidator = new BooleanValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _showDistances\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showDistances", "showDistances", org.exolab.castor.xml.NodeType.Attribute);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Tree target = (Tree) object;\r
+                if(!target.hasShowDistances())\r
+                    return null;\r
+                return (target.getShowDistances() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Tree target = (Tree) object;\r
+                    // if null, use delete method for optional primitives \r
+                    if (value == null) {\r
+                        target.deleteShowDistances();\r
+                        return;\r
+                    }\r
+                    target.setShowDistances( ((java.lang.Boolean)value).booleanValue());\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _showDistances\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            BooleanValidator typeValidator = new BooleanValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _markUnlinked\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_markUnlinked", "markUnlinked", org.exolab.castor.xml.NodeType.Attribute);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Tree target = (Tree) object;\r
+                if(!target.hasMarkUnlinked())\r
+                    return null;\r
+                return (target.getMarkUnlinked() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Tree target = (Tree) object;\r
+                    // if null, use delete method for optional primitives \r
+                    if (value == null) {\r
+                        target.deleteMarkUnlinked();\r
+                        return;\r
+                    }\r
+                    target.setMarkUnlinked( ((java.lang.Boolean)value).booleanValue());\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _markUnlinked\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            BooleanValidator typeValidator = new BooleanValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _fitToWindow\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_fitToWindow", "fitToWindow", org.exolab.castor.xml.NodeType.Attribute);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Tree target = (Tree) object;\r
+                if(!target.hasFitToWindow())\r
+                    return null;\r
+                return (target.getFitToWindow() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Tree target = (Tree) object;\r
+                    // if null, use delete method for optional primitives \r
+                    if (value == null) {\r
+                        target.deleteFitToWindow();\r
+                        return;\r
+                    }\r
+                    target.setFitToWindow( ((java.lang.Boolean)value).booleanValue());\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _fitToWindow\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            BooleanValidator typeValidator = new BooleanValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _currentTree\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_currentTree", "currentTree", org.exolab.castor.xml.NodeType.Attribute);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Tree target = (Tree) object;\r
+                if(!target.hasCurrentTree())\r
+                    return null;\r
+                return (target.getCurrentTree() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Tree target = (Tree) object;\r
+                    // if null, use delete method for optional primitives \r
+                    if (value == null) {\r
+                        target.deleteCurrentTree();\r
+                        return;\r
+                    }\r
+                    target.setCurrentTree( ((java.lang.Boolean)value).booleanValue());\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _currentTree\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            BooleanValidator typeValidator = new BooleanValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- initialize element descriptors\r
+        \r
+        //-- _title\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_title", "title", org.exolab.castor.xml.NodeType.Element);\r
+        desc.setImmutable(true);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Tree target = (Tree) object;\r
+                return target.getTitle();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Tree target = (Tree) object;\r
+                    target.setTitle( (java.lang.String) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        desc.setNameSpaceURI("www.jalview.org");\r
+        desc.setMultivalued(false);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _title\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            StringValidator typeValidator = new StringValidator();\r
+            typeValidator.setWhiteSpace("preserve");\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _newick\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_newick", "newick", org.exolab.castor.xml.NodeType.Element);\r
+        desc.setImmutable(true);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Tree target = (Tree) object;\r
+                return target.getNewick();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Tree target = (Tree) object;\r
+                    target.setNewick( (java.lang.String) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        desc.setNameSpaceURI("www.jalview.org");\r
+        desc.setMultivalued(false);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _newick\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            StringValidator typeValidator = new StringValidator();\r
+            typeValidator.setWhiteSpace("preserve");\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+    } //-- jalview.schemabinding.version2.TreeDescriptor()\r
+\r
+\r
+      //-----------/\r
+     //- Methods -/\r
+    //-----------/\r
+\r
+    /**\r
+     * Method getAccessMode\r
+     * \r
+     * \r
+     * \r
+     * @return AccessMode\r
+     */\r
+    public org.exolab.castor.mapping.AccessMode getAccessMode()\r
     {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-          throws IllegalStateException\r
-      {\r
-        Tree target = (Tree) object;\r
-        if (!target.hasHeight())\r
-        {\r
-          return null;\r
-        }\r
-        return new java.lang.Integer(target.getHeight());\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-          throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          Tree target = (Tree) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteHeight();\r
-            return;\r
-          }\r
-          target.setHeight( ( (java.lang.Integer) value).intValue());\r
-        }\r
-        catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
         return null;\r
-      }\r
-    });\r
-    desc.setHandler(handler);\r
-    addFieldDescriptor(desc);\r
-\r
-    //-- validation code for: _height\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { //-- local scope\r
-      IntegerValidator typeValidator = new IntegerValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    //-- _xpos\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
-        Integer.TYPE, "_xpos", "xpos", org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
+    } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
+\r
+    /**\r
+     * Method getExtends\r
+     * \r
+     * \r
+     * \r
+     * @return ClassDescriptor\r
+     */\r
+    public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
     {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-          throws IllegalStateException\r
-      {\r
-        Tree target = (Tree) object;\r
-        if (!target.hasXpos())\r
-        {\r
-          return null;\r
-        }\r
-        return new java.lang.Integer(target.getXpos());\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-          throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          Tree target = (Tree) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteXpos();\r
-            return;\r
-          }\r
-          target.setXpos( ( (java.lang.Integer) value).intValue());\r
-        }\r
-        catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
         return null;\r
-      }\r
-    });\r
-    desc.setHandler(handler);\r
-    addFieldDescriptor(desc);\r
-\r
-    //-- validation code for: _xpos\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { //-- local scope\r
-      IntegerValidator typeValidator = new IntegerValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    //-- _ypos\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
-        Integer.TYPE, "_ypos", "ypos", org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
+    } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
+\r
+    /**\r
+     * Method getIdentity\r
+     * \r
+     * \r
+     * \r
+     * @return FieldDescriptor\r
+     */\r
+    public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
     {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-          throws IllegalStateException\r
-      {\r
-        Tree target = (Tree) object;\r
-        if (!target.hasYpos())\r
-        {\r
-          return null;\r
-        }\r
-        return new java.lang.Integer(target.getYpos());\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-          throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          Tree target = (Tree) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteYpos();\r
-            return;\r
-          }\r
-          target.setYpos( ( (java.lang.Integer) value).intValue());\r
-        }\r
-        catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    });\r
-    desc.setHandler(handler);\r
-    addFieldDescriptor(desc);\r
-\r
-    //-- validation code for: _ypos\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { //-- local scope\r
-      IntegerValidator typeValidator = new IntegerValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    //-- _fontName\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
-        String.class, "_fontName", "fontName",\r
-        org.exolab.castor.xml.NodeType.Attribute);\r
-    desc.setImmutable(true);\r
-    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
+        return identity;\r
+    } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
+\r
+    /**\r
+     * Method getJavaClass\r
+     * \r
+     * \r
+     * \r
+     * @return Class\r
+     */\r
+    public java.lang.Class getJavaClass()\r
     {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-          throws IllegalStateException\r
-      {\r
-        Tree target = (Tree) object;\r
-        return target.getFontName();\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-          throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          Tree target = (Tree) object;\r
-          target.setFontName( (java.lang.String) value);\r
-        }\r
-        catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    });\r
-    desc.setHandler(handler);\r
-    addFieldDescriptor(desc);\r
-\r
-    //-- validation code for: _fontName\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { //-- local scope\r
-      StringValidator typeValidator = new StringValidator();\r
-      typeValidator.setWhiteSpace("preserve");\r
-      fieldValidator.setValidator(typeValidator);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    //-- _fontSize\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
-        Integer.TYPE, "_fontSize", "fontSize",\r
-        org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
+        return jalview.schemabinding.version2.Tree.class;\r
+    } //-- java.lang.Class getJavaClass() \r
+\r
+    /**\r
+     * Method getNameSpacePrefix\r
+     * \r
+     * \r
+     * \r
+     * @return String\r
+     */\r
+    public java.lang.String getNameSpacePrefix()\r
     {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-          throws IllegalStateException\r
-      {\r
-        Tree target = (Tree) object;\r
-        if (!target.hasFontSize())\r
-        {\r
-          return null;\r
-        }\r
-        return new java.lang.Integer(target.getFontSize());\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-          throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          Tree target = (Tree) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteFontSize();\r
-            return;\r
-          }\r
-          target.setFontSize( ( (java.lang.Integer) value).intValue());\r
-        }\r
-        catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    });\r
-    desc.setHandler(handler);\r
-    addFieldDescriptor(desc);\r
-\r
-    //-- validation code for: _fontSize\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { //-- local scope\r
-      IntegerValidator typeValidator = new IntegerValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    //-- _fontStyle\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
-        Integer.TYPE, "_fontStyle", "fontStyle",\r
-        org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
+        return nsPrefix;\r
+    } //-- java.lang.String getNameSpacePrefix() \r
+\r
+    /**\r
+     * Method getNameSpaceURI\r
+     * \r
+     * \r
+     * \r
+     * @return String\r
+     */\r
+    public java.lang.String getNameSpaceURI()\r
     {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-          throws IllegalStateException\r
-      {\r
-        Tree target = (Tree) object;\r
-        if (!target.hasFontStyle())\r
-        {\r
-          return null;\r
-        }\r
-        return new java.lang.Integer(target.getFontStyle());\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-          throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          Tree target = (Tree) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteFontStyle();\r
-            return;\r
-          }\r
-          target.setFontStyle( ( (java.lang.Integer) value).intValue());\r
-        }\r
-        catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    });\r
-    desc.setHandler(handler);\r
-    addFieldDescriptor(desc);\r
-\r
-    //-- validation code for: _fontStyle\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { //-- local scope\r
-      IntegerValidator typeValidator = new IntegerValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    //-- _threshold\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(float.class,\r
-        "_threshold", "threshold", org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
+        return nsURI;\r
+    } //-- java.lang.String getNameSpaceURI() \r
+\r
+    /**\r
+     * Method getValidator\r
+     * \r
+     * \r
+     * \r
+     * @return TypeValidator\r
+     */\r
+    public org.exolab.castor.xml.TypeValidator getValidator()\r
     {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-          throws IllegalStateException\r
-      {\r
-        Tree target = (Tree) object;\r
-        if (!target.hasThreshold())\r
-        {\r
-          return null;\r
-        }\r
-        return new java.lang.Float(target.getThreshold());\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-          throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          Tree target = (Tree) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteThreshold();\r
-            return;\r
-          }\r
-          target.setThreshold( ( (java.lang.Float) value).floatValue());\r
-        }\r
-        catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    });\r
-    desc.setHandler(handler);\r
-    addFieldDescriptor(desc);\r
-\r
-    //-- validation code for: _threshold\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { //-- local scope\r
-      FloatValidator typeValidator = new FloatValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    //-- _showBootstrap\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
-        Boolean.TYPE, "_showBootstrap", "showBootstrap",\r
-        org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
+        return this;\r
+    } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
+\r
+    /**\r
+     * Method getXMLName\r
+     * \r
+     * \r
+     * \r
+     * @return String\r
+     */\r
+    public java.lang.String getXMLName()\r
     {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-          throws IllegalStateException\r
-      {\r
-        Tree target = (Tree) object;\r
-        if (!target.hasShowBootstrap())\r
-        {\r
-          return null;\r
-        }\r
-        return (target.getShowBootstrap() ? java.lang.Boolean.TRUE :\r
-                java.lang.Boolean.FALSE);\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-          throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          Tree target = (Tree) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteShowBootstrap();\r
-            return;\r
-          }\r
-          target.setShowBootstrap( ( (java.lang.Boolean) value).booleanValue());\r
-        }\r
-        catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    });\r
-    desc.setHandler(handler);\r
-    addFieldDescriptor(desc);\r
-\r
-    //-- validation code for: _showBootstrap\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { //-- local scope\r
-      BooleanValidator typeValidator = new BooleanValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    //-- _showDistances\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
-        Boolean.TYPE, "_showDistances", "showDistances",\r
-        org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-          throws IllegalStateException\r
-      {\r
-        Tree target = (Tree) object;\r
-        if (!target.hasShowDistances())\r
-        {\r
-          return null;\r
-        }\r
-        return (target.getShowDistances() ? java.lang.Boolean.TRUE :\r
-                java.lang.Boolean.FALSE);\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-          throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          Tree target = (Tree) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteShowDistances();\r
-            return;\r
-          }\r
-          target.setShowDistances( ( (java.lang.Boolean) value).booleanValue());\r
-        }\r
-        catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    });\r
-    desc.setHandler(handler);\r
-    addFieldDescriptor(desc);\r
-\r
-    //-- validation code for: _showDistances\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { //-- local scope\r
-      BooleanValidator typeValidator = new BooleanValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    //-- _markUnlinked\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
-        Boolean.TYPE, "_markUnlinked", "markUnlinked",\r
-        org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-          throws IllegalStateException\r
-      {\r
-        Tree target = (Tree) object;\r
-        if (!target.hasMarkUnlinked())\r
-        {\r
-          return null;\r
-        }\r
-        return (target.getMarkUnlinked() ? java.lang.Boolean.TRUE :\r
-                java.lang.Boolean.FALSE);\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-          throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          Tree target = (Tree) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteMarkUnlinked();\r
-            return;\r
-          }\r
-          target.setMarkUnlinked( ( (java.lang.Boolean) value).booleanValue());\r
-        }\r
-        catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    });\r
-    desc.setHandler(handler);\r
-    addFieldDescriptor(desc);\r
-\r
-    //-- validation code for: _markUnlinked\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { //-- local scope\r
-      BooleanValidator typeValidator = new BooleanValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    //-- _fitToWindow\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
-        Boolean.TYPE, "_fitToWindow", "fitToWindow",\r
-        org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-          throws IllegalStateException\r
-      {\r
-        Tree target = (Tree) object;\r
-        if (!target.hasFitToWindow())\r
-        {\r
-          return null;\r
-        }\r
-        return (target.getFitToWindow() ? java.lang.Boolean.TRUE :\r
-                java.lang.Boolean.FALSE);\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-          throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          Tree target = (Tree) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteFitToWindow();\r
-            return;\r
-          }\r
-          target.setFitToWindow( ( (java.lang.Boolean) value).booleanValue());\r
-        }\r
-        catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    });\r
-    desc.setHandler(handler);\r
-    addFieldDescriptor(desc);\r
-\r
-    //-- validation code for: _fitToWindow\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { //-- local scope\r
-      BooleanValidator typeValidator = new BooleanValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    //-- _currentTree\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
-        Boolean.TYPE, "_currentTree", "currentTree",\r
-        org.exolab.castor.xml.NodeType.Attribute);\r
-    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-          throws IllegalStateException\r
-      {\r
-        Tree target = (Tree) object;\r
-        if (!target.hasCurrentTree())\r
-        {\r
-          return null;\r
-        }\r
-        return (target.getCurrentTree() ? java.lang.Boolean.TRUE :\r
-                java.lang.Boolean.FALSE);\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-          throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          Tree target = (Tree) object;\r
-          // if null, use delete method for optional primitives\r
-          if (value == null)\r
-          {\r
-            target.deleteCurrentTree();\r
-            return;\r
-          }\r
-          target.setCurrentTree( ( (java.lang.Boolean) value).booleanValue());\r
-        }\r
-        catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    });\r
-    desc.setHandler(handler);\r
-    addFieldDescriptor(desc);\r
-\r
-    //-- validation code for: _currentTree\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { //-- local scope\r
-      BooleanValidator typeValidator = new BooleanValidator();\r
-      fieldValidator.setValidator(typeValidator);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    //-- initialize element descriptors\r
-\r
-    //-- _title\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
-        String.class, "_title", "title", org.exolab.castor.xml.NodeType.Element);\r
-    desc.setImmutable(true);\r
-    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-          throws IllegalStateException\r
-      {\r
-        Tree target = (Tree) object;\r
-        return target.getTitle();\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-          throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          Tree target = (Tree) object;\r
-          target.setTitle( (java.lang.String) value);\r
-        }\r
-        catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    });\r
-    desc.setHandler(handler);\r
-    desc.setNameSpaceURI("www.jalview.org");\r
-    desc.setMultivalued(false);\r
-    addFieldDescriptor(desc);\r
-\r
-    //-- validation code for: _title\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { //-- local scope\r
-      StringValidator typeValidator = new StringValidator();\r
-      typeValidator.setWhiteSpace("preserve");\r
-      fieldValidator.setValidator(typeValidator);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-    //-- _newick\r
-    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.\r
-        String.class, "_newick", "newick",\r
-        org.exolab.castor.xml.NodeType.Element);\r
-    desc.setImmutable(true);\r
-    handler = (new org.exolab.castor.xml.XMLFieldHandler()\r
-    {\r
-      public java.lang.Object getValue(java.lang.Object object)\r
-          throws IllegalStateException\r
-      {\r
-        Tree target = (Tree) object;\r
-        return target.getNewick();\r
-      }\r
-\r
-      public void setValue(java.lang.Object object, java.lang.Object value)\r
-          throws IllegalStateException, IllegalArgumentException\r
-      {\r
-        try\r
-        {\r
-          Tree target = (Tree) object;\r
-          target.setNewick( (java.lang.String) value);\r
-        }\r
-        catch (java.lang.Exception ex)\r
-        {\r
-          throw new IllegalStateException(ex.toString());\r
-        }\r
-      }\r
-\r
-      public java.lang.Object newInstance(java.lang.Object parent)\r
-      {\r
-        return null;\r
-      }\r
-    });\r
-    desc.setHandler(handler);\r
-    desc.setNameSpaceURI("www.jalview.org");\r
-    desc.setMultivalued(false);\r
-    addFieldDescriptor(desc);\r
-\r
-    //-- validation code for: _newick\r
-    fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-    { //-- local scope\r
-      StringValidator typeValidator = new StringValidator();\r
-      typeValidator.setWhiteSpace("preserve");\r
-      fieldValidator.setValidator(typeValidator);\r
-    }\r
-    desc.setValidator(fieldValidator);\r
-  } //-- jalview.schemabinding.version2.TreeDescriptor()\r
-\r
-  //-----------/\r
-  //- Methods -/\r
-  //-----------/\r
-\r
-  /**\r
-   * Method getAccessMode\r
-   *\r
-   *\r
-   *\r
-   * @return AccessMode\r
-   */\r
-  public org.exolab.castor.mapping.AccessMode getAccessMode()\r
-  {\r
-    return null;\r
-  } //-- org.exolab.castor.mapping.AccessMode getAccessMode()\r
-\r
-  /**\r
-   * Method getExtends\r
-   *\r
-   *\r
-   *\r
-   * @return ClassDescriptor\r
-   */\r
-  public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
-  {\r
-    return null;\r
-  } //-- org.exolab.castor.mapping.ClassDescriptor getExtends()\r
-\r
-  /**\r
-   * Method getIdentity\r
-   *\r
-   *\r
-   *\r
-   * @return FieldDescriptor\r
-   */\r
-  public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
-  {\r
-    return identity;\r
-  } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
-\r
-  /**\r
-   * Method getJavaClass\r
-   *\r
-   *\r
-   *\r
-   * @return Class\r
-   */\r
-  public java.lang.Class getJavaClass()\r
-  {\r
-    return jalview.schemabinding.version2.Tree.class;\r
-  } //-- java.lang.Class getJavaClass()\r
-\r
-  /**\r
-   * Method getNameSpacePrefix\r
-   *\r
-   *\r
-   *\r
-   * @return String\r
-   */\r
-  public java.lang.String getNameSpacePrefix()\r
-  {\r
-    return nsPrefix;\r
-  } //-- java.lang.String getNameSpacePrefix()\r
-\r
-  /**\r
-   * Method getNameSpaceURI\r
-   *\r
-   *\r
-   *\r
-   * @return String\r
-   */\r
-  public java.lang.String getNameSpaceURI()\r
-  {\r
-    return nsURI;\r
-  } //-- java.lang.String getNameSpaceURI()\r
-\r
-  /**\r
-   * Method getValidator\r
-   *\r
-   *\r
-   *\r
-   * @return TypeValidator\r
-   */\r
-  public org.exolab.castor.xml.TypeValidator getValidator()\r
-  {\r
-    return this;\r
-  } //-- org.exolab.castor.xml.TypeValidator getValidator()\r
-\r
-  /**\r
-   * Method getXMLName\r
-   *\r
-   *\r
-   *\r
-   * @return String\r
-   */\r
-  public java.lang.String getXMLName()\r
-  {\r
-    return xmlName;\r
-  } //-- java.lang.String getXMLName()\r
+        return xmlName;\r
+    } //-- java.lang.String getXMLName() \r
 \r
 }\r