JAL-1620 version bump and release notes

[jalview.git] / src / jalview / schemabinding / version2 / VAMSAS.java

diff --git a/src/jalview/schemabinding/version2/VAMSAS.java b/src/jalview/schemabinding/version2/VAMSAS.java
index d025824..2f60489 100644 (file)
--- a/src/jalview/schemabinding/version2/VAMSAS.java
+++ b/src/jalview/schemabinding/version2/VAMSAS.java
@@ -1,16 +1,31 @@
 /*
- * This class was automatically generated with 
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
- * Schema.
- * $Id$
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
+ * Copyright (C) 2014 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
-
 package jalview.schemabinding.version2;
 
 //---------------------------------/
 //- Imported classes and packages -/
 //---------------------------------/
 
+import jalview.util.MessageManager;
+
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
 
@@ -143,9 +158,11 @@ public class VAMSAS implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._sequenceSetList.size())
     {
-      throw new IndexOutOfBoundsException("getSequenceSet: Index value '"
-              + index + "' not in range [0.."
-              + (this._sequenceSetList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                         "getSequenceSet",
+                         Integer.valueOf(index).toString(),
+                         Integer.valueOf((this._sequenceSetList.size() - 1)).toString()
+          })); 
     }
 
     return (jalview.schemabinding.version2.SequenceSet) _sequenceSetList
@@ -192,8 +209,11 @@ public class VAMSAS implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._treeList.size())
     {
-      throw new IndexOutOfBoundsException("getTree: Index value '" + index
-              + "' not in range [0.." + (this._treeList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                 "getTree",
+                 Integer.valueOf(index).toString(),
+                 Integer.valueOf((this._treeList.size() - 1)).toString()
+        })); 
     }
 
     return (java.lang.String) _treeList.get(index);
@@ -357,9 +377,11 @@ public class VAMSAS implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._sequenceSetList.size())
     {
-      throw new IndexOutOfBoundsException("setSequenceSet: Index value '"
-              + index + "' not in range [0.."
-              + (this._sequenceSetList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                         "setSequenceSet",
+                         Integer.valueOf(index).toString(),
+                         Integer.valueOf((this._sequenceSetList.size() - 1)).toString()
+          })); 
     }
 
     this._sequenceSetList.set(index, vSequenceSet);
@@ -396,8 +418,11 @@ public class VAMSAS implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._treeList.size())
     {
-      throw new IndexOutOfBoundsException("setTree: Index value '" + index
-              + "' not in range [0.." + (this._treeList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                 "setTree",
+                 Integer.valueOf(index).toString(),
+                 Integer.valueOf((this._treeList.size() - 1)).toString()
+        })); 
     }
 
     this._treeList.set(index, vTree);