added aligned codon frames, and dataset reference ids for sequenceSet and sequences...

[jalview.git] / src / jalview / schemabinding / version2 / descriptors / DBRefDescriptor.java

diff --git a/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java b/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
index 877f931..1a55978 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
@@ -55,6 +55,9 @@ public class DBRefDescriptor extends org.exolab.castor.xml.util.XMLClassDescript
         _nsURI = "www.vamsas.ac.uk/jalview/version2";\r
         _xmlName = "DBRef";\r
         _elementDefinition = true;\r
+        \r
+        //-- set grouping compositor\r
+        setCompositorAsSequence();\r
         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;\r
         org.exolab.castor.mapping.FieldHandler             handler        = null;\r
         org.exolab.castor.xml.FieldValidator               fieldValidator = null;\r
@@ -173,6 +176,39 @@ public class DBRefDescriptor extends org.exolab.castor.xml.util.XMLClassDescript
         desc.setValidator(fieldValidator);\r
         //-- initialize element descriptors\r
         \r
+        //-- _mapping\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Mapping.class, "_mapping", "Mapping", org.exolab.castor.xml.NodeType.Element);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                DBRef target = (DBRef) object;\r
+                return target.getMapping();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    DBRef target = (DBRef) object;\r
+                    target.setMapping( (jalview.schemabinding.version2.Mapping) value);\r
+                } catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance(java.lang.Object parent) {\r
+                return new jalview.schemabinding.version2.Mapping();\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
+        desc.setMultivalued(false);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _mapping\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+        }\r
+        desc.setValidator(fieldValidator);\r
     }\r
 \r
 \r