// -- initialize element descriptors
- // -- _details
+ // -- _pairwiseMatrix
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
- java.lang.String.class, "_details", "details",
+ jalview.schemabinding.version2.PairwiseMatrix.class,
+ "_pairwiseMatrix", "pairwiseMatrix",
org.exolab.castor.xml.NodeType.Element);
- desc.setImmutable(true);
handler = new org.exolab.castor.xml.XMLFieldHandler()
{
public java.lang.Object getValue(java.lang.Object object)
throws IllegalStateException
{
PcaDataType target = (PcaDataType) object;
- return target.getDetails();
+ return target.getPairwiseMatrix();
}
public void setValue(java.lang.Object object, java.lang.Object value)
try
{
PcaDataType target = (PcaDataType) object;
- target.setDetails((java.lang.String) value);
+ target.setPairwiseMatrix(
+ (jalview.schemabinding.version2.PairwiseMatrix) value);
} catch (java.lang.Exception ex)
{
throw new IllegalStateException(ex.toString());
public java.lang.Object newInstance(java.lang.Object parent)
{
- return null;
+ return new jalview.schemabinding.version2.PairwiseMatrix();
}
};
desc.setHandler(handler);
desc.setMultivalued(false);
addFieldDescriptor(desc);
- // -- validation code for: _details
+ // -- validation code for: _pairwiseMatrix
fieldValidator = new org.exolab.castor.xml.FieldValidator();
fieldValidator.setMinOccurs(1);
{ // -- local scope
- org.exolab.castor.xml.validators.StringValidator typeValidator;
- typeValidator = new org.exolab.castor.xml.validators.StringValidator();
- fieldValidator.setValidator(typeValidator);
- typeValidator.setWhiteSpace("preserve");
}
desc.setValidator(fieldValidator);
- // -- _pairwiseMatrix
+ // -- _tridiagonalMatrix
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
- jalview.schemabinding.version2.PairwiseMatrix.class,
- "_pairwiseMatrix", "pairwiseMatrix",
+ jalview.schemabinding.version2.TridiagonalMatrix.class,
+ "_tridiagonalMatrix", "tridiagonalMatrix",
org.exolab.castor.xml.NodeType.Element);
handler = new org.exolab.castor.xml.XMLFieldHandler()
{
throws IllegalStateException
{
PcaDataType target = (PcaDataType) object;
- return target.getPairwiseMatrix();
+ return target.getTridiagonalMatrix();
}
public void setValue(java.lang.Object object, java.lang.Object value)
try
{
PcaDataType target = (PcaDataType) object;
- target.setPairwiseMatrix(
- (jalview.schemabinding.version2.PairwiseMatrix) value);
+ target.setTridiagonalMatrix(
+ (jalview.schemabinding.version2.TridiagonalMatrix) value);
} catch (java.lang.Exception ex)
{
throw new IllegalStateException(ex.toString());
public java.lang.Object newInstance(java.lang.Object parent)
{
- return new jalview.schemabinding.version2.PairwiseMatrix();
+ return new jalview.schemabinding.version2.TridiagonalMatrix();
}
};
desc.setHandler(handler);
desc.setMultivalued(false);
addFieldDescriptor(desc);
- // -- validation code for: _pairwiseMatrix
+ // -- validation code for: _tridiagonalMatrix
fieldValidator = new org.exolab.castor.xml.FieldValidator();
fieldValidator.setMinOccurs(1);
{ // -- local scope
}
desc.setValidator(fieldValidator);
- // -- _eigenMatrix
+ // -- _tridiagonalD
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
- jalview.schemabinding.version2.EigenMatrix.class,
- "_eigenMatrix", "eigenMatrix",
+ jalview.schemabinding.version2.TridiagonalD.class,
+ "_tridiagonalD", "tridiagonalD",
org.exolab.castor.xml.NodeType.Element);
handler = new org.exolab.castor.xml.XMLFieldHandler()
{
throws IllegalStateException
{
PcaDataType target = (PcaDataType) object;
- return target.getEigenMatrix();
+ return target.getTridiagonalD();
}
public void setValue(java.lang.Object object, java.lang.Object value)
try
{
PcaDataType target = (PcaDataType) object;
- target.setEigenMatrix(
- (jalview.schemabinding.version2.EigenMatrix) value);
+ target.setTridiagonalD(
+ (jalview.schemabinding.version2.TridiagonalD) value);
} catch (java.lang.Exception ex)
{
throw new IllegalStateException(ex.toString());
public java.lang.Object newInstance(java.lang.Object parent)
{
- return new jalview.schemabinding.version2.EigenMatrix();
+ return new jalview.schemabinding.version2.TridiagonalD();
}
};
desc.setHandler(handler);
desc.setMultivalued(false);
addFieldDescriptor(desc);
- // -- validation code for: _eigenMatrix
+ // -- validation code for: _tridiagonalD
fieldValidator = new org.exolab.castor.xml.FieldValidator();
fieldValidator.setMinOccurs(1);
{ // -- local scope
}
desc.setValidator(fieldValidator);
- // -- _eigenMatrixD
+ // -- _tridiagonalE
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
- jalview.schemabinding.version2.EigenMatrixD.class,
- "_eigenMatrixD", "eigenMatrixD",
+ jalview.schemabinding.version2.TridiagonalE.class,
+ "_tridiagonalE", "tridiagonalE",
org.exolab.castor.xml.NodeType.Element);
handler = new org.exolab.castor.xml.XMLFieldHandler()
{
throws IllegalStateException
{
PcaDataType target = (PcaDataType) object;
- return target.getEigenMatrixD();
+ return target.getTridiagonalE();
}
public void setValue(java.lang.Object object, java.lang.Object value)
try
{
PcaDataType target = (PcaDataType) object;
- target.setEigenMatrixD(
- (jalview.schemabinding.version2.EigenMatrixD) value);
+ target.setTridiagonalE(
+ (jalview.schemabinding.version2.TridiagonalE) value);
} catch (java.lang.Exception ex)
{
throw new IllegalStateException(ex.toString());
public java.lang.Object newInstance(java.lang.Object parent)
{
- return new jalview.schemabinding.version2.EigenMatrixD();
+ return new jalview.schemabinding.version2.TridiagonalE();
}
};
desc.setHandler(handler);
desc.setMultivalued(false);
addFieldDescriptor(desc);
- // -- validation code for: _eigenMatrixD
+ // -- validation code for: _tridiagonalE
fieldValidator = new org.exolab.castor.xml.FieldValidator();
fieldValidator.setMinOccurs(1);
{ // -- local scope
}
desc.setValidator(fieldValidator);
- // -- _eigenMatrixE
+ // -- _eigenMatrix
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
- jalview.schemabinding.version2.EigenMatrixE.class,
- "_eigenMatrixE", "eigenMatrixE",
+ jalview.schemabinding.version2.EigenMatrix.class,
+ "_eigenMatrix", "eigenMatrix",
org.exolab.castor.xml.NodeType.Element);
handler = new org.exolab.castor.xml.XMLFieldHandler()
{
throws IllegalStateException
{
PcaDataType target = (PcaDataType) object;
- return target.getEigenMatrixE();
+ return target.getEigenMatrix();
}
public void setValue(java.lang.Object object, java.lang.Object value)
try
{
PcaDataType target = (PcaDataType) object;
- target.setEigenMatrixE(
- (jalview.schemabinding.version2.EigenMatrixE) value);
+ target.setEigenMatrix(
+ (jalview.schemabinding.version2.EigenMatrix) value);
} catch (java.lang.Exception ex)
{
throw new IllegalStateException(ex.toString());
public java.lang.Object newInstance(java.lang.Object parent)
{
- return new jalview.schemabinding.version2.EigenMatrixE();
+ return new jalview.schemabinding.version2.EigenMatrix();
}
};
desc.setHandler(handler);
desc.setMultivalued(false);
addFieldDescriptor(desc);
- // -- validation code for: _eigenMatrixE
+ // -- validation code for: _eigenMatrix
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();
+ fieldValidator.setMinOccurs(1);
+ { // -- local scope
+ }
+ desc.setValidator(fieldValidator);
+ // -- _eigenMatrixD
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+ jalview.schemabinding.version2.EigenMatrixD.class,
+ "_eigenMatrixD", "eigenMatrixD",
+ org.exolab.castor.xml.NodeType.Element);
+ handler = new org.exolab.castor.xml.XMLFieldHandler()
+ {
+ public java.lang.Object getValue(java.lang.Object object)
+ throws IllegalStateException
+ {
+ PcaDataType target = (PcaDataType) object;
+ return target.getEigenMatrixD();
+ }
+
+ public void setValue(java.lang.Object object, java.lang.Object value)
+ throws IllegalStateException, IllegalArgumentException
+ {
+ try
+ {
+ PcaDataType target = (PcaDataType) object;
+ target.setEigenMatrixD(
+ (jalview.schemabinding.version2.EigenMatrixD) value);
+ } catch (java.lang.Exception ex)
+ {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+
+ public java.lang.Object newInstance(java.lang.Object parent)
+ {
+ return new jalview.schemabinding.version2.EigenMatrixD();
+ }
+ };
+ desc.setHandler(handler);
+ desc.setNameSpaceURI("www.jalview.org");
+ desc.setRequired(true);
+ desc.setMultivalued(false);
+ addFieldDescriptor(desc);
+
+ // -- validation code for: _eigenMatrixD
fieldValidator = new org.exolab.castor.xml.FieldValidator();
fieldValidator.setMinOccurs(1);
{ // -- local scope