profile visualizations are now logos

[jalview.git] / src / jalview / schemabinding / version2 / descriptors / ViewportDescriptor.java

diff --git a/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java b/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
index cad1109..7c7bc04 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
@@ -1054,15 +1054,15 @@ public class ViewportDescriptor extends org.exolab.castor.xml.util.XMLClassDescr
             fieldValidator.setValidator(typeValidator);\r
         }\r
         desc.setValidator(fieldValidator);\r
-        //-- _showConsensusProfile\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showConsensusProfile", "showConsensusProfile", org.exolab.castor.xml.NodeType.Attribute);\r
+        //-- _showSequenceLogo\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showSequenceLogo", "showSequenceLogo", org.exolab.castor.xml.NodeType.Attribute);\r
         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
             public java.lang.Object getValue( java.lang.Object object ) \r
                 throws IllegalStateException\r
             {\r
                 Viewport target = (Viewport) object;\r
-                if (!target.hasShowConsensusProfile()) { return null; }\r
-                return (target.getShowConsensusProfile() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
+                if (!target.hasShowSequenceLogo()) { return null; }\r
+                return (target.getShowSequenceLogo() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
             }\r
             public void setValue( java.lang.Object object, java.lang.Object value) \r
                 throws IllegalStateException, IllegalArgumentException\r
@@ -1071,10 +1071,10 @@ public class ViewportDescriptor extends org.exolab.castor.xml.util.XMLClassDescr
                     Viewport target = (Viewport) object;\r
                     // if null, use delete method for optional primitives \r
                     if (value == null) {\r
-                        target.deleteShowConsensusProfile();\r
+                        target.deleteShowSequenceLogo();\r
                         return;\r
                     }\r
-                    target.setShowConsensusProfile( ((java.lang.Boolean) value).booleanValue());\r
+                    target.setShowSequenceLogo( ((java.lang.Boolean) value).booleanValue());\r
                 } catch (java.lang.Exception ex) {\r
                     throw new IllegalStateException(ex.toString());\r
                 }\r
@@ -1087,7 +1087,7 @@ public class ViewportDescriptor extends org.exolab.castor.xml.util.XMLClassDescr
         desc.setMultivalued(false);\r
         addFieldDescriptor(desc);\r
         \r
-        //-- validation code for: _showConsensusProfile\r
+        //-- validation code for: _showSequenceLogo\r
         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
         { //-- local scope\r
             org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r