Sequence is char []

[jalview.git] / src / jalview / schemes / AnnotationColourGradient.java

diff --git a/src/jalview/schemes/AnnotationColourGradient.java b/src/jalview/schemes/AnnotationColourGradient.java
index 4a78aa1..20b0885 100755 (executable)
--- a/src/jalview/schemes/AnnotationColourGradient.java
+++ b/src/jalview/schemes/AnnotationColourGradient.java
@@ -126,7 +126,7 @@ public class AnnotationColourGradient extends ResidueColourScheme
      *\r
      * @return DOCUMENT ME!\r
      */\r
-    public Color findColour(String n)\r
+    public Color findColour(char c)\r
     {\r
         return Color.red;\r
     }\r
@@ -139,15 +139,15 @@ public class AnnotationColourGradient extends ResidueColourScheme
      *\r
      * @return DOCUMENT ME!\r
      */\r
-    public Color findColour(String n, int j)\r
+    public Color findColour(char c, int j)\r
     {\r
         Color currentColour = Color.white;\r
 \r
-        if ((threshold == 0) || aboveThreshold(n, j))\r
+        if ((threshold == 0) || aboveThreshold(c, j))\r
         {\r
           if( j<annotation.annotations.length\r
               && annotation.annotations[j]!=null\r
-              && !jalview.util.Comparison.isGap(n.charAt(0)))\r
+              && !jalview.util.Comparison.isGap(c))\r
           {\r
             if(  aboveAnnotationThreshold==NO_THRESHOLD\r
                || (annotationThreshold!=null && aboveAnnotationThreshold==ABOVE_THRESHOLD && annotation.annotations[j].value>=annotationThreshold.value)\r
@@ -155,7 +155,7 @@ public class AnnotationColourGradient extends ResidueColourScheme
             {\r
               if(colourScheme!=null)\r
               {\r
-                currentColour = colourScheme.findColour(n, j);\r
+                currentColour = colourScheme.findColour(c, j);\r
               }\r
               else if(range!=0)\r
               {\r