JAL-1492 JAL-1397 JAL-643 JAL-969 factory method to clone and apply colour scheme...

[jalview.git] / src / jalview / schemes / ClustalxColourScheme.java

diff --git a/src/jalview/schemes/ClustalxColourScheme.java b/src/jalview/schemes/ClustalxColourScheme.java
index 62c94d8..77d7e5b 100755 (executable)
--- a/src/jalview/schemes/ClustalxColourScheme.java
+++ b/src/jalview/schemes/ClustalxColourScheme.java
@@ -327,6 +327,14 @@ public class ClustalxColourScheme extends ResidueColourScheme // implements
   {
     this.includeGaps = includeGaps;
   }
+  @Override
+  public ColourSchemeI applyTo(AnnotatedCollectionI sg,
+          Map<SequenceI, SequenceCollectionI> hiddenRepSequences)
+  {
+    ClustalxColourScheme css= new ClustalxColourScheme(sg, hiddenRepSequences);
+    css.includeGaps = includeGaps;
+    return css;
+  }
 }
 
 class ConsensusColour