package jalview.schemes;
import java.awt.Color;
+import java.util.Map;
+import jalview.datamodel.AlignmentI;
import jalview.datamodel.AnnotatedCollectionI;
+import jalview.datamodel.SequenceCollectionI;
+import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
public interface ColourSchemeI
public void setThreshold(int ct, boolean ignoreGaps);
- public void alignmentChanged(AnnotatedCollectionI alignment);
+ public void alignmentChanged(AnnotatedCollectionI alignment, Map<SequenceI, SequenceCollectionI> hiddenReps);
}