Conservation colour scheme is no more

[jalview.git] / src / jalview / schemes / ColourSchemeI.java

diff --git a/src/jalview/schemes/ColourSchemeI.java b/src/jalview/schemes/ColourSchemeI.java
index 9cc74f1..8f0f3c5 100755 (executable)
--- a/src/jalview/schemes/ColourSchemeI.java
+++ b/src/jalview/schemes/ColourSchemeI.java
@@ -18,8 +18,6 @@
  */\r
 package jalview.schemes;\r
 \r
-import java.util.*;\r
-\r
 import java.awt.*;\r
 \r
 public interface ColourSchemeI\r
@@ -28,5 +26,19 @@ public interface ColourSchemeI
 \r
   public Color findColour(String s, int j);\r
 \r
-  public void setConsensus(Vector v);\r
+  public void setConsensus(java.util.Vector v);\r
+\r
+  public void setConservation(jalview.analysis.Conservation c);\r
+\r
+  public boolean conservationApplied();\r
+\r
+  public void setConservationInc(int i);\r
+\r
+  public int getConservationInc();\r
+\r
+  public int getThreshold();\r
+\r
+  public void setThreshold(int ct, boolean ignoreGaps);\r
+\r
+\r
 }\r