* values of the colourscheme constants is important for callers of
* getColourName(int i), since it can be used to enumerate the set of built in
* colours. The FIRST_COLOUR and LAST_COLOUR symbols are provided for this.
- *
+ *
* @author $author$
* @version $Revision$
*/
public static final int TCOFFEE = 15;
-
/**
* index of first colourscheme (includes 'None')
*/
/**
* DOCUMENT ME!
- *
+ *
* @param name
* DOCUMENT ME!
- *
+ *
* @return DOCUMENT ME!
*/
public static int getColourIndexFromName(String name)
/**
* DOCUMENT ME!
- *
+ *
* @param cs
* DOCUMENT ME!
- *
+ *
* @return DOCUMENT ME!
*/
public static String getColourName(ColourSchemeI cs)
/**
* DOCUMENT ME!
- *
+ *
* @param index
* DOCUMENT ME!
- *
+ *
* @return DOCUMENT ME!
*/
public static String getColourName(int index)
break;
/*
* case COVARIATION: ret = "Covariation";
- *
+ *
* break;
*/
case USER_DEFINED:
return ret;
}
+
/**
* retrieve or create colourscheme associated with name
- *
+ *
* @param seqs
* sequences to colour
* @param width
}
/**
- * Construct an instance of ColourSchemeI corresponding to the given colourscheme index
- *
+ * Construct an instance of ColourSchemeI corresponding to the given
+ * colourscheme index
+ *
* @param seqs
* sequences to be coloured by colourscheme
* @param width
* geometry of alignment
* @param index
* colourscheme number
- *
- * @return null or an instance of the colourscheme configured to colour given sequence set
+ *
+ * @return null or an instance of the colourscheme configured to colour given
+ * sequence set
*/
- public static ColourSchemeI getColour(jalview.datamodel.AnnotatedCollectionI coll, int index)
+ public static ColourSchemeI getColour(
+ jalview.datamodel.AnnotatedCollectionI coll, int index)
{
- // TODO 3.0 2.8 refactor signature to take an alignmentI like container so colourschemes based on annotation can be initialised
+ // TODO 3.0 2.8 refactor signature to take an alignmentI like container so
+ // colourschemes based on annotation can be initialised
ColourSchemeI cs = null;
switch (index)
case TCOFFEE:
cs = new TCoffeeColourScheme(coll);
- // case COVARIATION:
- // cs = new CovariationColourScheme(annotation);
+ // case COVARIATION:
+ // cs = new CovariationColourScheme(annotation);
- // break;
+ // break;
case USER_DEFINED:
Color[] col = new Color[24];