Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch

[jalview.git] / src / jalview / schemes / ColourSchemeProperty.java

diff --git a/src/jalview/schemes/ColourSchemeProperty.java b/src/jalview/schemes/ColourSchemeProperty.java
index 04ffbe9..e80860e 100755 (executable)
--- a/src/jalview/schemes/ColourSchemeProperty.java
+++ b/src/jalview/schemes/ColourSchemeProperty.java
@@ -89,12 +89,14 @@ public class ColourSchemeProperty
   
   public static final int RNAHELIX = 16;
 
+  public static final int RNAINTERACTION = 17;
+
   /**
    * index of first colourscheme (includes 'None')
    */
   public static final int FIRST_COLOUR = NONE;
 
-  public static final int LAST_COLOUR = RNAHELIX;
+  public static final int LAST_COLOUR = RNAINTERACTION;
 
   /**
    * DOCUMENT ME!
@@ -169,6 +171,10 @@ public class ColourSchemeProperty
     {
       ret = PURINEPYRIMIDINE;
     }
+    else if (name.equalsIgnoreCase("RNA Interaction type"))
+    {
+      ret = RNAINTERACTION;
+    }
     else if (name.equalsIgnoreCase("RNA Helices"))
     {
       ret = RNAHELIX;
@@ -344,6 +350,11 @@ public class ColourSchemeProperty
       ret = "T-Coffee Scores";
 
       break;
+      
+    case RNAINTERACTION:
+        ret = "RNA Interaction type";
+
+        break;
     case RNAHELIX:
       ret = "RNA Helices";
 
@@ -507,8 +518,7 @@ public class ColourSchemeProperty
       
       // case COVARIATION:
       // cs = new CovariationColourScheme(annotation);
-
-      // break;
+    // break;
 
     case USER_DEFINED:
       Color[] col = new Color[24];