Formatting changes

[jalview.git] / src / jalview / schemes / NucleotideColourScheme.java

diff --git a/src/jalview/schemes/NucleotideColourScheme.java b/src/jalview/schemes/NucleotideColourScheme.java
index 0cca608..8785954 100755 (executable)
--- a/src/jalview/schemes/NucleotideColourScheme.java
+++ b/src/jalview/schemes/NucleotideColourScheme.java
@@ -21,24 +21,58 @@ package jalview.schemes;
 import java.awt.*;\r
 \r
 \r
-public class NucleotideColourScheme extends ResidueColourScheme {\r
-    public NucleotideColourScheme() {\r
+/**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @author $author$\r
+ * @version $Revision$\r
+ */\r
+public class NucleotideColourScheme extends ResidueColourScheme\r
+{\r
+    /**\r
+     * Creates a new NucleotideColourScheme object.\r
+     */\r
+    public NucleotideColourScheme()\r
+    {\r
         super(ResidueProperties.nucleotide, 0);\r
     }\r
 \r
-    public Color findColour(String n) {\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @param n DOCUMENT ME!\r
+     *\r
+     * @return DOCUMENT ME!\r
+     */\r
+    public Color findColour(String n)\r
+    {\r
         // System.out.println("called"); log.debug\r
         return colors[((Integer) (ResidueProperties.nucleotideHash.get(n))).intValue()];\r
     }\r
 \r
-    public Color findColour(String n, int j) {\r
-        if ((threshold == 0) || aboveThreshold(n, j)) {\r
-            try {\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @param n DOCUMENT ME!\r
+     * @param j DOCUMENT ME!\r
+     *\r
+     * @return DOCUMENT ME!\r
+     */\r
+    public Color findColour(String n, int j)\r
+    {\r
+        if ((threshold == 0) || aboveThreshold(n, j))\r
+        {\r
+            try\r
+            {\r
                 return colors[((Integer) (ResidueProperties.nucleotideHash.get(n))).intValue()];\r
-            } catch (Exception ex) {\r
+            }\r
+            catch (Exception ex)\r
+            {\r
                 return Color.white;\r
             }\r
-        } else {\r
+        }\r
+        else\r
+        {\r
             return Color.white;\r
         }\r
     }\r