*/
package jalview.schemes;
-import jalview.analysis.AAFrequency;
import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
return Color.white;
}
- if ((Integer
- .parseInt(consensus[j].get(AAFrequency.MAXCOUNT).toString()) != -1)
- && consensus[j].contains(String.valueOf(c)))
+ if (consensus[j].getMaxCount() > 0) //!= -1)
+ //&& consensus[j].contains(String.valueOf(c)))
{
- sc = ((Float) consensus[j].get(ignoreGaps)).floatValue();
+ sc = consensus[j].getPercentageIdentity(ignoreGaps);
if (!jalview.util.Comparison.isGap(c))
{