JAL-3210 Barebones gradle/buildship/eclipse. See README

[jalview.git] / src / jalview / schemes / RNAHelicesColour.java

diff --git a/src/jalview/schemes/RNAHelicesColour.java b/src/jalview/schemes/RNAHelicesColour.java
index c61eeed..33b275d 100644 (file)
--- a/src/jalview/schemes/RNAHelicesColour.java
+++ b/src/jalview/schemes/RNAHelicesColour.java
@@ -70,14 +70,14 @@ public class RNAHelicesColour extends ResidueColourScheme
   {
     super(ResidueProperties.nucleotideIndex);
     this.annotation = annotation;
-    ColourSchemes.resetRnaHelicesShading();
+    ColourSchemeProperty.resetRnaHelicesShading();
     refresh();
   }
 
   public RNAHelicesColour(AnnotatedCollectionI alignment)
   {
     super(ResidueProperties.nucleotideIndex);
-    ColourSchemes.resetRnaHelicesShading();
+    ColourSchemeProperty.resetRnaHelicesShading();
     alignmentChanged(alignment, null);
   }
 
@@ -160,7 +160,7 @@ public class RNAHelicesColour extends ResidueColourScheme
         }
 
       }
-      ColourSchemes.initRnaHelicesShading(numHelix);
+      ColourSchemeProperty.initRnaHelicesShading(numHelix);
     }
   }
 
@@ -200,7 +200,7 @@ public class RNAHelicesColour extends ResidueColourScheme
     currentHelix = positionsToHelix.get(j);
     if (currentHelix != null)
     {
-      currentColour = ColourSchemes.getInstance().rnaHelices[Integer
+      currentColour = ColourSchemeProperty.rnaHelices[Integer
               .parseInt(currentHelix)];
     }
     return currentColour;