if (av.getAlignment().getGroups() != null)
{
oldgroupColours = new Hashtable();
- Vector allGroups = ap.getAlignment().getGroups();
- SequenceGroup sg;
- for (int g = 0; g < allGroups.size(); g++)
+ for (SequenceGroup sg:ap.getAlignment().getGroups())
{
- sg = (SequenceGroup) allGroups.get(g);
if (sg.cs != null)
{
oldgroupColours.put(sg, sg.cs);
if (av.getAlignment().getGroups() != null)
{
- Vector allGroups = ap.getAlignment().getGroups();
- SequenceGroup sg;
- for (int g = 0; g < allGroups.size(); g++)
+ for (SequenceGroup sg:ap.getAlignment().getGroups())
{
- sg = (SequenceGroup) allGroups.get(g);
-
if (sg.cs == null)
{
continue;
av.setGlobalColourScheme(oldcs);
if (av.getAlignment().getGroups() != null)
{
- Vector allGroups = ap.getAlignment().getGroups();
- SequenceGroup sg;
- for (int g = 0; g < allGroups.size(); g++)
+ for (SequenceGroup sg:ap.getAlignment().getGroups())
{
- sg = (SequenceGroup) allGroups.get(g);
sg.cs = (ColourSchemeI) oldgroupColours.get(sg);
}
}