boolean adjusting = false;
- public RNAHelicesColourChooser(AlignViewportI av, final AlignmentViewPanel ap)
+ public RNAHelicesColourChooser(AlignViewportI av,
+ final AlignmentViewPanel ap)
{
oldcs = av.getGlobalColourScheme();
if (av.getAlignment().getGroups() != null)
{
oldgroupColours = new Hashtable();
- for (SequenceGroup sg:ap.getAlignment().getGroups())
+ for (SequenceGroup sg : ap.getAlignment().getGroups())
{
if (sg.cs != null)
{
RNAHelicesColour rhc = null;
rhc = new RNAHelicesColour(currentAnnotation);
-
+
av.setGlobalColourScheme(rhc);
if (av.getAlignment().getGroups() != null)
{
- for (SequenceGroup sg:ap.getAlignment().getGroups())
+ for (SequenceGroup sg : ap.getAlignment().getGroups())
{
if (sg.cs == null)
{
av.setGlobalColourScheme(oldcs);
if (av.getAlignment().getGroups() != null)
{
- for (SequenceGroup sg:ap.getAlignment().getGroups())
+ for (SequenceGroup sg : ap.getAlignment().getGroups())
{
sg.cs = (ColourSchemeI) oldgroupColours.get(sg);
}