JAL-3518 more extraction of ChimeraX commands as overrides

[jalview.git] / src / jalview / structure / StructureCommandsI.java

diff --git a/src/jalview/structure/StructureCommandsI.java b/src/jalview/structure/StructureCommandsI.java
index a5a419c..eda5aa9 100644 (file)
--- a/src/jalview/structure/StructureCommandsI.java
+++ b/src/jalview/structure/StructureCommandsI.java
@@ -87,4 +87,17 @@ public interface StructureCommandsI
    */
   String showChains(List<String> toShow);
 
+  /**
+   * Returns zero, one or more commands to set attributes on mapped residues in
+   * the structure viewer for any features present and displayed in Jalview
+   * 
+   * @param ssm
+   * @param files
+   * @param sequence
+   * @param avp
+   * @return
+   */
+  String[] setAttributesForFeatures(StructureSelectionManager ssm,
+          String[] files, SequenceI[][] sequence, AlignmentViewPanel avp);
+
 }