for (String file : files)
{
notLoaded = file;
+ if (file == null)
+ {
+ continue;
+ }
try
{
StructureMapping[] sm = getSsm().getMapping(file);
{
for (SequenceI s : seqs)
{
- if (s == seq)
+ if (s == seq
+ || (s.getDatasetSequence() != null && s
+ .getDatasetSequence() == seq
+ .getDatasetSequence()))
{
return true;
}