JAL-3806 require mapping extent covers both sequence’s dataset sequence to avoid...

[jalview.git] / src / jalview / util / MappingUtils.java

diff --git a/src/jalview/util/MappingUtils.java b/src/jalview/util/MappingUtils.java
index 03a32c9..c66fe00 100644 (file)
--- a/src/jalview/util/MappingUtils.java
+++ b/src/jalview/util/MappingUtils.java
@@ -380,6 +380,7 @@ public final class MappingUtils
             List<AlignedCodonFrame> mapping = Arrays
                     .asList(new AlignedCodonFrame[]
                     { acf });
+            // locate start 
             SearchResultsI sr = buildSearchResults(selected,
                     startResiduePos, mapping);
             for (SearchResultMatchI m : sr.getResults())
@@ -387,6 +388,7 @@ public final class MappingUtils
               mappedStartResidue = m.getStart();
               mappedEndResidue = m.getEnd();
             }
+            // locate end - allowing for adjustment of start range
             sr = buildSearchResults(selected, endResiduePos, mapping);
             for (SearchResultMatchI m : sr.getResults())
             {