JAL-4366 JAL-728 simple hack to use 3di matrix when gecos-3di is enabled

[jalview.git] / src / jalview / viewmodel / AlignmentViewport.java

diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java
index 3e1bc63..0150e62 100644 (file)
--- a/src/jalview/viewmodel/AlignmentViewport.java
+++ b/src/jalview/viewmodel/AlignmentViewport.java
@@ -2309,6 +2309,14 @@ public abstract class AlignmentViewport
   }
 
   @Override
+  public boolean is3di()
+  {
+    return getAlignment() == null ? false
+            : !isNucleotide() && getGlobalColourScheme() != null
+                    && "3Di-gecos".equalsIgnoreCase(
+                            getGlobalColourScheme().getSchemeName());
+  }
+  @Override
   public boolean isNucleotide()
   {
     return getAlignment() == null ? false : getAlignment().isNucleotide();