consensus = new AlignmentAnnotation("Consensus", "PID",
new Annotation[1], 0f, 100f, AlignmentAnnotation.BAR_GRAPH);
initConsensus(consensus);
- gapcounts = new AlignmentAnnotation("Gaps", "Number of Gaps",
+ gapcounts = new AlignmentAnnotation("Occupancy",
+ "Number of aligned positions",
new Annotation[1], 0f, alignment.getHeight(),
AlignmentAnnotation.BAR_GRAPH);
initGapCounts(gapcounts);