JAL-34 - quick hack to see how we can do alignment comparison for splitframes linking...

[jalview.git] / src / jalview / viewmodel / AlignmentViewport.java

diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java
index 0150e62..3ab2fce 100644 (file)
--- a/src/jalview/viewmodel/AlignmentViewport.java
+++ b/src/jalview/viewmodel/AlignmentViewport.java
@@ -74,6 +74,7 @@ import jalview.util.MappingUtils;
 import jalview.util.MessageManager;
 import jalview.viewmodel.styles.ViewStyle;
 import jalview.workers.AlignCalcManager;
+import jalview.workers.AlignmentComparisonThread;
 import jalview.workers.ComplementConsensusThread;
 import jalview.workers.ConsensusThread;
 import jalview.workers.StrucConsensusThread;
@@ -895,6 +896,18 @@ public abstract class AlignmentViewport
         }
       }
     }
+    if (getCodingComplement() != null)
+    {
+      if (getCodingComplement().isNucleotide() == isNucleotide())
+      {
+        if (calculator.getRegisteredWorkersOfClass(
+                AlignmentComparisonThread.class) == null)
+        {
+          calculator
+                  .registerWorker(new AlignmentComparisonThread(this, ap));
+        }
+      }
+    }
   }
 
   // --------START Structure Conservation