Further abstractions and clean up

[jalview.git] / src / jalview / viewmodel / annotationfilter / AnnotationFilterParameter.java

diff --git a/src/jalview/viewmodel/annotationfilter/AnnotationFilterParameter.java b/src/jalview/viewmodel/annotationfilter/AnnotationFilterParameter.java
new file mode 100644 (file)
index 0000000..3cd4ef7
--- /dev/null
+++ b/src/jalview/viewmodel/annotationfilter/AnnotationFilterParameter.java
@@ -0,0 +1,101 @@
+package jalview.viewmodel.annotationfilter;
+
+import java.util.ArrayList;
+import java.util.List;
+
+public class AnnotationFilterParameter
+{
+  public enum ThresholdType
+  {
+    NO_THRESHOLD, BELOW_THRESHOLD, ABOVE_THRESHOLD;
+  }
+
+  public enum SearchableAnnotationField
+  {
+    DISPLAY_STRING, DESCRIPTION;
+  }
+  private ThresholdType thresholdType;
+
+  private float thresholdValue;
+
+  private boolean filterAlphaHelix = false;
+
+  private boolean filterBetaSheet = false;
+
+  private boolean filterTurn = false;
+
+  private String regexString;
+
+  private List<SearchableAnnotationField> regexSearchFields = new ArrayList<SearchableAnnotationField>();
+
+  public ThresholdType getThresholdType()
+  {
+    return thresholdType;
+  }
+
+  public void setThresholdType(ThresholdType thresholdType)
+  {
+    this.thresholdType = thresholdType;
+  }
+
+  public float getThresholdValue()
+  {
+    return thresholdValue;
+  }
+
+  public void setThresholdValue(float thresholdValue)
+  {
+    this.thresholdValue = thresholdValue;
+  }
+
+  public String getRegexString()
+  {
+    return regexString;
+  }
+
+  public void setRegexString(String regexString)
+  {
+    this.regexString = regexString;
+  }
+
+  public List<SearchableAnnotationField> getRegexSearchFields()
+  {
+    return regexSearchFields;
+  }
+
+  public void addRegexSearchField(SearchableAnnotationField regexSearchField)
+  {
+    this.regexSearchFields.add(regexSearchField);
+  }
+
+  public boolean isFilterAlphaHelix()
+  {
+    return filterAlphaHelix;
+  }
+
+  public void setFilterAlphaHelix(boolean alphaHelix)
+  {
+    this.filterAlphaHelix = alphaHelix;
+  }
+
+  public boolean isFilterBetaSheet()
+  {
+    return filterBetaSheet;
+  }
+
+  public void setFilterBetaSheet(boolean betaSheet)
+  {
+    this.filterBetaSheet = betaSheet;
+  }
+
+  public boolean isFilterTurn()
+  {
+    return filterTurn;
+  }
+
+  public void setFilterTurn(boolean turn)
+  {
+    this.filterTurn = turn;
+  }
+
+}