for (AlignmentAnnotation ann : anns)
{
AlignmentAnnotation theAnn = alignment.findOrCreateAnnotation(
- ann.label, ann.description, false, null, null);
+ ann.label, ann.getCalcId(), ann.autoCalculated,
+ ann.sequenceRef,
+ ann.groupRef);
theAnn.showAllColLabels = true;
theAnn.graph = AlignmentAnnotation.BAR_GRAPH;
theAnn.scaleColLabel = true;