JAL-2773 add new flag to paintAlignment(updateOverview,updateStructures) and first...

[jalview.git] / src / jalview / workers / ColumnCounterSetWorker.java

diff --git a/src/jalview/workers/ColumnCounterSetWorker.java b/src/jalview/workers/ColumnCounterSetWorker.java
index 24cb717..74695fe 100644 (file)
--- a/src/jalview/workers/ColumnCounterSetWorker.java
+++ b/src/jalview/workers/ColumnCounterSetWorker.java
@@ -57,7 +57,7 @@ class ColumnCounterSetWorker extends AlignCalcWorker
           AlignmentViewPanel panel, FeatureSetCounterI counter)
   {
     super(viewport, panel);
-    ourAnnots = new ArrayList<AlignmentAnnotation>();
+    ourAnnots = new ArrayList<>();
     this.counter = counter;
     calcMan.registerWorker(this);
   }
@@ -116,7 +116,7 @@ class ColumnCounterSetWorker extends AlignCalcWorker
       {
         ap.adjustAnnotationHeight();
       }
-      ap.paintAlignment(true);
+      ap.paintAlignment(true, true);
     }
 
   }