File Parsing returns Alignments, not Sequence[]

[jalview.git] / src / jalview / ws / JPredThread.java

diff --git a/src/jalview/ws/JPredThread.java b/src/jalview/ws/JPredThread.java
index 0e4e396..0c9b8d3 100644 (file)
--- a/src/jalview/ws/JPredThread.java
+++ b/src/jalview/ws/JPredThread.java
@@ -93,8 +93,8 @@ implements WSClientI
             al = new Alignment(sqs);\r
             alcsel=(ColumnSelection) alandcolsel[1];\r
           } else {\r
-            al = new Alignment(new FormatAdapter().readFile(result.getAligfile(),\r
-                "Paste", format));\r
+            al = new FormatAdapter().readFile(result.getAligfile(),\r
+                "Paste", format);\r
             sqs = new SequenceI[al.getHeight()];\r
 \r
             for (int i = 0, j = al.getHeight(); i < j; i++)\r