Command takes alignment, not gapChar

[jalview.git] / src / jalview / ws / JPredThread.java

diff --git a/src/jalview/ws/JPredThread.java b/src/jalview/ws/JPredThread.java
index 0c9b8d3..b4833b1 100644 (file)
--- a/src/jalview/ws/JPredThread.java
+++ b/src/jalview/ws/JPredThread.java
@@ -137,7 +137,7 @@ implements WSClientI
           /////\r
           new jalview.commands.RemoveGapsCommand("Remove Gaps",\r
                                                  new SequenceI[] {sqs[msaIndex]},\r
-                                                 gc);\r
+                                                 alignFrame.getCurrentView().getAlignment());\r
 \r
           SequenceI profileseq=al.getSequenceAt(FirstSeq);\r
           profileseq.setSequence(sqs[msaIndex].getSequenceAsString());\r