" of " + altitle + "\nJob details\n");
String jobtitle = WebServiceName.toLowerCase();
if (jobtitle.endsWith("alignment")) {
- if (submitGaps
- && (!jobtitle.endsWith("realignment")
- || !jobtitle.contains("profile"))) {
+ if (submitGaps
+ && (!jobtitle.endsWith("realignment")
+ || jobtitle.indexOf("profile")==-1)) {
int pos=jobtitle.indexOf("alignment");
jobtitle = WebServiceName.substring(0, pos) + "re-alignment of "+altitle;
} else {
} else {
jobtitle = WebServiceName+(submitGaps? " re" : " ") +"alignment of "+altitle;
}
-
+
MsaWSThread msathread = new MsaWSThread(server, WsURL, wsInfo, alignFrame,
WebServiceName,
jobtitle,