Added alignment ordering option to 'Sort by' and implemented generic

[jalview.git] / src / jalview / ws / MsaWServices.java

diff --git a/src/jalview/ws/MsaWServices.java b/src/jalview/ws/MsaWServices.java
new file mode 100755 (executable)
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--- /dev/null
+++ b/src/jalview/ws/MsaWServices.java
@@ -0,0 +1,39 @@
+package jalview.ws;
+import java.util.Hashtable;
+/**
+ * <p>Title: MsaWServices </p>
+ *
+ * <p>Description: Registry of MsaWSI style services </p>
+ *
+ * <p>Copyright: Copyright (c) 2004</p>
+ *
+ * <p>Company: Dundee University</p>
+ *
+ * @author not attributable
+ * @version 1.0
+ */
+public class MsaWServices {
+  public static Hashtable info;
+  static
+  {
+    info = new Hashtable();
+    info.put("ClustalWS",
+             new String[]
+             {
+             "http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS",
+             "ClustalW Alignment job",
+             "\"Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple" +
+             " sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice."
+             + " Nucleic Acids Research, submitted, June 1994."
+    });
+    info.put("MuscleWS",
+             new String[]
+             {
+             "http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS",
+             "Muscle Alignment job",
+             "Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment "
+             +
+             "with high accuracy and high throughput, Nucleic Acids Research 32(5), 1792-97."
+    });
+  };
+}