+/*\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)\r
+ * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * \r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ * \r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+ * GNU General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+ */\r
package jalview.ws.dbsources;\r
\r
import java.util.Hashtable;\r
public class EmblCdsSouce extends EmblXmlSource implements DbSourceProxy\r
{\r
\r
- public EmblCdsSouce() {\r
+ public EmblCdsSouce()\r
+ {\r
super();\r
- addDbSourceProperty(DBRefSource.CODINGSEQDB); \r
+ addDbSourceProperty(DBRefSource.CODINGSEQDB);\r
}\r
- \r
+\r
public String getAccessionSeparator()\r
{\r
- return null;\r
+ return null;\r
}\r
\r
public Regex getAccessionValidator()\r
\r
public String getDbVersion()\r
{\r
- return "0"; // TODO : this is dynamically set for a returned record - not tied to proxy\r
+ return "0"; // TODO : this is dynamically set for a returned record - not\r
+ // tied to proxy\r
}\r
\r
public AlignmentI getSequenceRecords(String queries) throws Exception\r
- { \r
- if (queries.indexOf(".")>-1)\r
+ {\r
+ if (queries.indexOf(".") > -1)\r
{\r
queries = queries.substring(0, queries.indexOf("."));\r
}\r
// TODO Auto-generated method stub\r
return true;\r
}\r
+\r
/**\r
* cDNA for LDHA_CHICK swissprot sequence\r
*/\r
{\r
return "CAA37824";\r
}\r
+\r
public String getDbName()\r
{\r
return "EMBL (CDS)";\r