Merge branch 'develop' into features/JAL-1705_ensembl

[jalview.git] / src / jalview / ws / dbsources / EmblXmlSource.java

diff --git a/src/jalview/ws/dbsources/EmblXmlSource.java b/src/jalview/ws/dbsources/EmblXmlSource.java
index 92e863a..20da45c 100644 (file)
--- a/src/jalview/ws/dbsources/EmblXmlSource.java
+++ b/src/jalview/ws/dbsources/EmblXmlSource.java
@@ -20,8 +20,6 @@
  */
 package jalview.ws.dbsources;
 
-import java.io.File;
-
 import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.SequenceI;
@@ -30,6 +28,8 @@ import jalview.datamodel.xdb.embl.EmblFile;
 import jalview.util.MessageManager;
 import jalview.ws.ebi.EBIFetchClient;
 
+import java.io.File;
+
 public abstract class EmblXmlSource extends EbiFileRetrievedProxy
 {
 
@@ -66,7 +66,9 @@ public abstract class EmblXmlSource extends EbiFileRetrievedProxy
     } catch (Exception e)
     {
       stopQuery();
-      throw new Exception(MessageManager.formatMessage("exception.ebiembl_retrieval_failed_on", new String[]{emprefx.toLowerCase(),query.trim()}), e);
+      throw new Exception(MessageManager.formatMessage(
+              "exception.ebiembl_retrieval_failed_on", new String[] {
+                  emprefx.toLowerCase(), query.trim() }), e);
     }
     return getEmblSequenceRecords(emprefx, query, reply);
   }
@@ -98,7 +100,9 @@ public abstract class EmblXmlSource extends EbiFileRetrievedProxy
       }
       else
       {
-        result.append(MessageManager.formatMessage("label.no_embl_record_found", new String[]{emprefx.toLowerCase(),query.trim()}));
+        result.append(MessageManager.formatMessage(
+                "label.no_embl_record_found",
+                new String[] { emprefx.toLowerCase(), query.trim() }));
       }
     }
     if (efile != null)
@@ -143,7 +147,8 @@ public abstract class EmblXmlSource extends EbiFileRetrievedProxy
     if (seqs != null && seqs.length > 0)
     {
       al = new Alignment(seqs);
-      result.append(MessageManager.formatMessage("label.embl_successfully_parsed", new String[]{emprefx}));
+      result.append(MessageManager.formatMessage(
+              "label.embl_successfully_parsed", new String[] { emprefx }));
       results = result;
     }
     stopQuery();